Next-generation physiology approaches to study microbiome function at single cell level
The function of cells in their native habitat often cannot be reliably predicted from genomic
data or from physiology studies of isolates. Traditional experimental approaches to study the …
data or from physiology studies of isolates. Traditional experimental approaches to study the …
The microbial rare biosphere: current concepts, methods and ecological principles
Our ability to describe the highly diverse pool of low abundance populations present in
natural microbial communities is increasing at an unprecedented pace. Yet we currently lack …
natural microbial communities is increasing at an unprecedented pace. Yet we currently lack …
Active antibiotic resistome in soils unraveled by single-cell isotope probing and targeted metagenomics
Antimicrobial resistance (AMR) in soils represents a serious risk to human health through
the food chain and human–nature contact. However, the active antibiotic-resistant bacteria …
the food chain and human–nature contact. However, the active antibiotic-resistant bacteria …
Diversity of cellulolytic microorganisms and microbial cellulases
Lignocellulosic biomass is a geographically abundant source of renewable energy, showing
enormous potential to contribute to escalating energy demands. Improving the industrial …
enormous potential to contribute to escalating energy demands. Improving the industrial …
Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils
FK Olagoke, A Bettermann, PTB Nguyen… - Biology and Fertility of …, 2022 - Springer
We investigated the effects of substrate (cellulose or starch) and different clay contents on
the production of microbial extracellular polymeric substances (EPS) and concomitant …
the production of microbial extracellular polymeric substances (EPS) and concomitant …
Single-cell exploration of active phosphate-solubilizing bacteria across diverse soil matrices for sustainable phosphorus management
Phosphate-solubilizing bacteria (PSB) are crucial for enhancing phosphorus bioavailability
and regulating phosphorus transformation processes. However, the in situ phosphorus …
and regulating phosphorus transformation processes. However, the in situ phosphorus …
Halving gypsum dose by Penicillium oxalicum on alkaline neutralization and microbial community reconstruction in bauxite residue
Y Jiang, X Qin, F Zhu, Y Zhang, XC Zhang… - Chemical Engineering …, 2023 - Elsevier
Bauxite residue is a high-alkaline solid waste generated during alumina production, which
greatly limits the growth of soil microorganisms and plants. Here, we developed a novel …
greatly limits the growth of soil microorganisms and plants. Here, we developed a novel …
Identifying glycan consumers in human gut microbiota samples using metabolic labeling coupled with fluorescence-activated cell sorting
L Dridi, F Altamura, E Gonzalez, O Lui… - Nature …, 2023 - nature.com
The composition and metabolism of the human gut microbiota are strongly influenced by
dietary complex glycans, which cause downstream effects on the physiology and health of …
dietary complex glycans, which cause downstream effects on the physiology and health of …
Microbial single-cell omics: the crux of the matter
Single-cell genomics and transcriptomics can provide reliable context for assembled
genome fragments and gene expression activity on the level of individual prokaryotic …
genome fragments and gene expression activity on the level of individual prokaryotic …
Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
NO Nou, JK Covington, D Lai, X Mayali… - Nature …, 2024 - nature.com
Few aerobic hyperthermophilic microorganisms degrade polysaccharides. Here, we
describe the genome-enabled enrichment and optical tweezer-based isolation of an aerobic …
describe the genome-enabled enrichment and optical tweezer-based isolation of an aerobic …