Construction of high accuracy machine learning interatomic potential for surface/interface of nanomaterials—A review

K Wan, J He, X Shi - Advanced Materials, 2024 - Wiley Online Library
The inherent discontinuity and unique dimensional attributes of nanomaterial surfaces and
interfaces bestow them with various exceptional properties. These properties, however, also …

Data generation for machine learning interatomic potentials and beyond

M Kulichenko, B Nebgen, N Lubbers, JS Smith… - Chemical …, 2024 - ACS Publications
The field of data-driven chemistry is undergoing an evolution, driven by innovations in
machine learning models for predicting molecular properties and behavior. Recent strides in …

Machine learning exciton Hamiltonians in light-harvesting complexes

E Cignoni, L Cupellini, B Mennucci - Journal of Chemical Theory …, 2023 - ACS Publications
We propose a machine learning (ML)-based strategy for an inexpensive calculation of
excitonic properties of light-harvesting complexes (LHCs). The strategy uses classical …

emle-engine: A Flexible Electrostatic Machine Learning Embedding Package for Multiscale Molecular Dynamics Simulations

K Zinovjev, L Hedges… - Journal of Chemical …, 2024 - ACS Publications
We present in this work the emle-engine package (https://github. com/chemle/emle-
engine)─ the implementation of a new machine learning embedding scheme for hybrid …

Charge-Optimized Electrostatic Interaction Atom-Centered Neural Network Algorithm

Z Song, J Han, G Henkelman, L Li - Journal of Chemical Theory …, 2024 - ACS Publications
Machine-learning algorithms have been proposed to capture electrostatic interactions by
using effective partial charges. These algorithms often rely on a pretrained model for partial …

Electrostatics as a Guiding Principle in Understanding and Designing Enzymes

JJ Ruiz-Pernía, K Swiderek, J Bertran… - Journal of Chemical …, 2024 - ACS Publications
Enzyme design faces challenges related to the implementation of the basic principles that
govern the catalytic activity in natural enzymes. In this work, we revisit basic electrostatic …

PhysNet meets CHARMM: A framework for routine machine learning/molecular mechanics simulations

K Song, S Käser, K Töpfer… - The Journal of …, 2023 - pubs.aip.org
Full-dimensional potential energy surfaces (PESs) based on machine learning (ML)
techniques provide a means for accurate and efficient molecular simulations in the gas and …

Machine learning the electric field response of condensed phase systems using perturbed neural network potentials

K Joll, P Schienbein, KM Rosso… - Nature Communications, 2024 - nature.com
The interaction of condensed phase systems with external electric fields is of major
importance in a myriad of processes in nature and technology, ranging from the field …

Machine learning accelerated photodynamics simulations

J Li, SA Lopez - Chemical Physics Reviews, 2023 - pubs.aip.org
Machine learning (ML) continues to revolutionize computational chemistry for accelerating
predictions and simulations by training on experimental or accurate but expensive quantum …

Electrostatic embedding machine learning for ground and excited state molecular dynamics of solvated molecules

P Mazzeo, E Cignoni, A Arcidiacono, L Cupellini… - Digital …, 2024 - pubs.rsc.org
The application of quantum mechanics (QM)/molecular mechanics (MM) models for studying
dynamics in complex systems is nowadays well established. However, their significant …