Cross-linking mass spectrometry (XL-MS): An emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2017 - pmc.ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

Leveraging crosslinking mass spectrometry in structural and cell biology

A Graziadei, J Rappsilber - Structure, 2022 - cell.com
Crosslinking mass spectrometry (crosslinking-MS) is a versatile tool providing structural
insights into protein conformation and protein-protein interactions. Its medium-resolution …

Towards a structurally resolved human protein interaction network

DF Burke, P Bryant, I Barrio-Hernandez… - Nature Structural & …, 2023 - nature.com
Cellular functions are governed by molecular machines that assemble through protein-
protein interactions. Their atomic details are critical to studying their molecular mechanisms …

Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry

DK Schweppe, JD Chavez, CF Lee… - Proceedings of the …, 2017 - National Acad Sciences
Mitochondrial protein interactions and complexes facilitate mitochondrial function. These
complexes range from simple dimers to the respirasome supercomplex consisting of …

Chemical cross-linking with mass spectrometry: a tool for systems structural biology

JD Chavez, JE Bruce - Current opinion in chemical biology, 2019 - Elsevier
Highlights•Cross-linking-mass spectrometry constitutes a chemical method to produce
protein complex structural model constraints.•A wide range of sample types are applicable …

[HTML][HTML] xiVIEW: Visualisation of crosslinking mass spectrometry data

CW Combe, M Graham, L Kolbowski, L Fischer… - Journal of Molecular …, 2024 - Elsevier
Crosslinking mass spectrometry (MS) has emerged as an important technique for
elucidating the in-solution structures of protein complexes and the topology of protein …

Chemical crosslinking mass spectrometry analysis of protein conformations and supercomplexes in heart tissue

JD Chavez, CF Lee, A Caudal, A Keller, R Tian… - Cell systems, 2018 - cell.com
While modern structural biology technologies have greatly expanded the size and type of
protein complexes that can now be studied, the ability to derive large-scale structural …

[HTML][HTML] Hybrid methods for combined experimental and computational determination of protein structure

JT Seffernick, S Lindert - The Journal of chemical physics, 2020 - pubs.aip.org
Knowledge of protein structure is paramount to the understanding of biological function,
developing new therapeutics, and making detailed mechanistic hypotheses. Therefore …

Label-free visual proteomics: Coupling MS-and EM-based approaches in structural biology

O Klykov, M Kopylov, B Carragher, AJR Heck, AJ Noble… - Molecular cell, 2022 - cell.com
Combining diverse experimental structural and interactomic methods allows for the
construction of comprehensible molecular encyclopedias of biological systems. Typically …

Systems structural biology measurements by in vivo cross-linking with mass spectrometry

JD Chavez, JP Mohr, M Mathay, X Zhong, A Keller… - Nature protocols, 2019 - nature.com
This protocol describes a workflow for utilizing large-scale cross-linking with mass
spectrometry (XL-MS) to make systems-level structural biology measurements in complex …