Homology modeling in drug discovery: Overview, current applications, and future perspectives

MT Muhammed, E Aki‐Yalcin - Chemical biology & drug design, 2019 - Wiley Online Library
Homology modeling is one of the computational structure prediction methods that are used
to determine protein 3D structure from its amino acid sequence. It is considered to be the …

Structure of fish Toll-like receptors (TLR) and NOD-like receptors (NLR)

BR Sahoo - International journal of biological macromolecules, 2020 - Elsevier
Innate immunity driven by pattern recognition receptor (PRR) protects the host from invading
pathogens. Aquatic animals like fish where the adaptive immunity is poorly developed …

Elucidating the interactions between heparin/heparan sulfate and SARS-CoV-2-related proteins—An important strategy for developing novel therapeutics for the …

M Yu, T Zhang, W Zhang, Q Sun, H Li… - Frontiers in Molecular …, 2021 - frontiersin.org
Owing to the high mortality and the spread rate, the infectious disease caused by SARS-CoV-
2 has become a major threat to public health and social economy, leading to over 70 million …

Shedding light on the puzzle of drug-membrane interactions: Experimental techniques and molecular dynamics simulations

D Lopes, S Jakobtorweihen, C Nunes… - Progress in lipid …, 2017 - Elsevier
Lipid membranes work as barriers, which leads to inevitable drug-membrane interactions in
vivo. These interactions affect the pharmacokinetic properties of drugs, such as their …

Functional regulation of aquaporin dynamics by lipid bilayer composition

ATP Nguyen, AT Weigle, D Shukla - Nature communications, 2024 - nature.com
With the diversity of lipid-protein interactions, any observed membrane protein dynamics or
functions directly depend on the lipid bilayer selection. However, the implications of lipid …

A computational approach applied to the study of potential allosteric inhibitors protease NS2B/NS3 from dengue virus

RA Costa, JAP Rocha, AS Pinheiro, ASS Costa… - Molecules, 2022 - mdpi.com
Dengue virus (DENV) is a danger to more than 400 million people in the world, and there is
no specific treatment. Thus, there is an urgent need to develop an effective method to …

[图书][B] Advances in protein chemistry and structural biology

R Donev - 2014 - books.google.com
This eclectic volume features two major topics: applications of mass spectrometry in
bioscience; and computational methods for analysis of protein structure and interactions with …

Coarse-grained models for protein-cell membrane interactions

R Bradley, R Radhakrishnan - Polymers, 2013 - mdpi.com
The physiological properties of biological soft matter are the product of collective
interactions, which span many time and length scales. Recent computational modeling …

A Structural and Energetic Model for the Slow-Onset Inhibition of the Mycobacterium tuberculosis Enoyl-ACP Reductase InhA

HJ Li, CT Lai, P Pan, W Yu, N Liu… - ACS chemical …, 2014 - ACS Publications
Slow-onset enzyme inhibitors are of great interest for drug discovery programs since the
slow dissociation of the inhibitor from the drug–target complex results in sustained target …

VinaMPI: Facilitating multiple receptor high‐throughput virtual docking on high‐performance computers

SR Ellingson, JC Smith, J Baudry - 2013 - Wiley Online Library
The program VinaMPI has been developed to enable massively large virtual drug screens
on leadership‐class computing resources, using a large number of cores to decrease the …