Functions of the 3′-untranslated regions of positive strand RNA viral genomes
TW Dreher - Annual review of phytopathology, 1999 - annualreviews.org
▪ Abstract Positive strand RNA viral genomes are unique in the viral world in serving a dual
role as mRNA and replicon. Since the origin of the minus-strand RNA replication …
role as mRNA and replicon. Since the origin of the minus-strand RNA replication …
HotKnots: heuristic prediction of RNA secondary structures including pseudoknots
We present HotKnots, a new heuristic algorithm for the prediction of RNA secondary
structures including pseudoknots. Based on the simple idea of iteratively forming stable …
structures including pseudoknots. Based on the simple idea of iteratively forming stable …
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
J Reeder, R Giegerich - BMC bioinformatics, 2004 - Springer
Background The general problem of RNA secondary structure prediction under the widely
used thermodynamic model is known to be NP-complete when the structures considered …
used thermodynamic model is known to be NP-complete when the structures considered …
Novel features in the tRNA-like world of plant viral RNAs
P Fechter, J Rudinger-Thirion, C Florentz… - Cellular and Molecular …, 2001 - Springer
tRNA-like domains are found at the 3′ end of genomic RNAs of several genera of plant
viral RNAs. Three groups of tRNA mimics have been characterized on the basis of their …
viral RNAs. Three groups of tRNA mimics have been characterized on the basis of their …
Feline calicivirus VP2 is essential for the production of infectious virions
SV Sosnovtsev, G Belliot, KO Chang… - Journal of …, 2005 - Am Soc Microbiol
The third open reading frame (ORF3) located at the 3′ end of the genomic RNA of feline
calicivirus (FCV) encodes a small (12.2-kDa) minor structural protein of 106 amino acids …
calicivirus (FCV) encodes a small (12.2-kDa) minor structural protein of 106 amino acids …
In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′-and 3′-terminal regions that influence RNA …
S You, B Falgout, L Markoff, R Padmanabhan - Journal of Biological …, 2001 - ASBMB
Viral replicases of many positive-strand RNA viruses are membrane-bound complexes of
cellular and viral proteins that include viral RNA-dependent RNA polymerase (RdRP). The …
cellular and viral proteins that include viral RNA-dependent RNA polymerase (RdRP). The …
Predicting structures and stabilities for H-type pseudoknots with interhelix loops
RNA pseudoknots play a critical role in RNA-related biology from the assembly of ribosome
to the regulation of viral gene expression. A predictive model for pseudoknot structure and …
to the regulation of viral gene expression. A predictive model for pseudoknot structure and …
Sequence and structural elements at the 3′ terminus of bovine viral diarrhea virus genomic RNA: functional role during RNA replication
H Yu, CW Grassmann, SE Behrens - Journal of virology, 1999 - Am Soc Microbiol
Bovine viral diarrhea virus (BVDV), a member of the genus Pestivirus in the family
Flaviviridae, has a positive-stranded RNA genome consisting of a single open reading frame …
Flaviviridae, has a positive-stranded RNA genome consisting of a single open reading frame …
[图书][B] Principles of plant virology: genome, pathogenicity, virus ecology.
S Astier, J Albouy, Y Maury, C Robaglia, H Lecoq - 2007 - cabidigitallibrary.org
A revised and updated version of the 2001 publication of the same name, this book is
divided into 3 sections on the virus, the cell and the plant (7 chapters), the virus in the …
divided into 3 sections on the virus, the cell and the plant (7 chapters), the virus in the …
Minimal template requirements for initiation of minus-strand synthesis in vitro by the RNA-dependent RNA polymerase of turnip yellow mosaic virus
B Deiman, AK Koenen, PWG Verlaan… - Journal of virology, 1998 - Am Soc Microbiol
From mutational analysis of the 3′-terminal hairpin of turnip yellow mosaic virus (TYMV)
RNA and use of nonstructured C-rich RNA templates, we conclude that the main …
RNA and use of nonstructured C-rich RNA templates, we conclude that the main …