Phenotyping for drought tolerance of crops in the genomics era

R Tuberosa - Frontiers in physiology, 2012 - frontiersin.org
Improving crops yield under water-limited conditions is the most daunting challenge faced
by breeders. To this end, accurate, relevant phenotyping plays an increasingly pivotal role …

Genotype× environment interaction QTL mapping in plants: lessons from Arabidopsis

M El-Soda, M Malosetti, BJ Zwaan, M Koornneef… - Trends in plant …, 2014 - cell.com
Plant growth and development are influenced by the genetic composition of the plant (G),
the environment (E), and the interaction between them (G× E). To produce suitable …

[HTML][HTML] Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding

FA Van Eeuwijk, D Bustos-Korts, EJ Millet, MP Boer… - Plant science, 2019 - Elsevier
New types of phenotyping tools generate large amounts of data on many aspects of plant
physiology and morphology with high spatial and temporal resolution. These new …

What should students in plant breeding know about the statistical aspects of genotype× environment interactions?

FA Van Eeuwijk, DV Bustos‐Korts, M Malosetti - Crop Science, 2016 - Wiley Online Library
A good statistical analysis of genotype× environment interactions (G× E) is a key
requirement for progress in any breeding program. Data for G× E analyses traditionally …

Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions

N Heslot, D Akdemir, ME Sorrells… - Theoretical and applied …, 2014 - Springer
Key message Development of models to predict genotype by environment interactions, in
unobserved environments, using environmental covariates, a crop model and genomic …

Biplot analysis of genotype× environment interaction: Proceed with caution

RC Yang, J Crossa, PL Cornelius, J Burgueño - Crop Science, 2009 - Wiley Online Library
Biplot analysis has been used for studying genotype× environment interaction (GE) or any
two‐way table. Its descriptive and visualization capabilities along with the availability of user …

Gene-by-environment interactions in plants: Molecular mechanisms, environmental drivers, and adaptive plasticity

JD Napier, RW Heckman, TE Juenger - The Plant Cell, 2023 - academic.oup.com
Plants demonstrate a broad range of responses to environmental shifts. One of the most
remarkable responses is plasticity, which is the ability of a single plant genotype to produce …

Increased prediction accuracy in wheat breeding trials using a marker× environment interaction genomic selection model

M Lopez-Cruz, J Crossa, D Bonnett… - G3: Genes …, 2015 - academic.oup.com
Genomic selection (GS) models use genome-wide genetic information to predict genetic
values of candidates of selection. Originally, these models were developed without …

Environment characterization as an aid to wheat improvement: interpreting genotype–environment interactions by modelling water-deficit patterns in North-Eastern …

K Chenu, M Cooper, GL Hammer… - Journal of …, 2011 - academic.oup.com
Genotype–environment interactions (GEI) limit genetic gain for complex traits such as
tolerance to drought. Characterization of the crop environment is an important step in …

Models for navigating biological complexity in breeding improved crop plants

G Hammer, M Cooper, F Tardieu, S Welch, B Walsh… - Trends in plant …, 2006 - cell.com
Progress in breeding higher-yielding crop plants would be greatly accelerated if the
phenotypic consequences of making changes to the genetic makeup of an organism could …