[HTML][HTML] Alternative splicing and protein diversity: plants versus animals

S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …

Alternative splicing in plants: Current knowledge and future directions for assessing the biological relevance of splice variants

RS Tognacca, FS Rodríguez, FE Aballay… - Journal of …, 2023 - academic.oup.com
Alternative splicing is an important regulatory process that produces multiple transcripts from
a single gene, significantly modulating the transcriptome and potentially the proteome …

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

R Zhang, CPG Calixto, Y Marquez… - Nucleic acids …, 2017 - academic.oup.com
Alternative splicing generates multiple transcript and protein isoforms from the same gene
and thus is important in gene expression regulation. To date, RNA-sequencing (RNA-seq) is …

Transcriptome reprogramming, epigenetic modifications and alternative splicing orchestrate the tomato root response to the beneficial fungus Trichoderma harzianum

M De Palma, M Salzano, C Villano… - Horticulture …, 2019 - academic.oup.com
Beneficial interactions of rhizosphere microorganisms are widely exploited for plant
biofertilization and mitigation of biotic and abiotic constraints. To provide new insights into …

[HTML][HTML] Alternative splicing as a regulator of early plant development

D Szakonyi, P Duque - Frontiers in plant science, 2018 - frontiersin.org
Most plant genes are interrupted by introns and the corresponding transcripts need to
undergo pre-mRNA splicing to remove these intervening sequences. Alternative splicing …

Detecting alternatively spliced transcript isoforms from single‐molecule long‐read sequences without a reference genome

X Liu, W Mei, PS Soltis, DE Soltis… - Molecular ecology …, 2017 - Wiley Online Library
Alternative splicing (AS) is a major source of transcript and proteome diversity, but
examining AS in species without well‐annotated reference genomes remains difficult …

Does co-transcriptional regulation of alternative splicing mediate plant stress responses?

I Jabre, ASN Reddy, M Kalyna… - Nucleic Acids …, 2019 - academic.oup.com
Plants display exquisite control over gene expression to elicit appropriate responses under
normal and stress conditions. Alternative splicing (AS) of pre-mRNAs, a process that …

BaRTv2: a highly resolved barley reference transcriptome for accurate transcript‐specific RNA‐seq quantification

M Coulter, JC Entizne, W Guo, M Bayer… - The Plant …, 2022 - Wiley Online Library
Accurate characterisation of splice junctions (SJs) as well as transcription start and end sites
in reference transcriptomes allows precise quantification of transcripts from RNA‐seq data …

Large-scale analysis of the cassava transcriptome reveals the impact of cold stress on alternative splicing

S Li, X Yu, Z Cheng, C Zeng, W Li… - Journal of …, 2020 - academic.oup.com
Alternative splicing is an essential post-transcriptional regulatory mechanism that can impact
mRNA stability and protein diversity of eukaryotic genomes. Although numerous forms of …

[HTML][HTML] A comprehensive analysis of alternative splicing in paleopolyploid maize

W Mei, S Liu, JC Schnable, CT Yeh… - Frontiers in plant …, 2017 - frontiersin.org
Identifying and characterizing alternative splicing (AS) enables our understanding of the
biological role of transcript isoform diversity. This study describes the use of publicly …