[HTML][HTML] Spatial components of molecular tissue biology
Methods for profiling RNA and protein expression in a spatially resolved manner are rapidly
evolving, making it possible to comprehensively characterize cells and tissues in health and …
evolving, making it possible to comprehensively characterize cells and tissues in health and …
Spatial omics technologies at multimodal and single cell/subcellular level
Spatial omics technologies enable a deeper understanding of cellular organizations and
interactions within a tissue of interest. These assays can identify specific compartments or …
interactions within a tissue of interest. These assays can identify specific compartments or …
Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
ZJ Cao, G Gao - Nature Biotechnology, 2022 - nature.com
Despite the emergence of experimental methods for simultaneous measurement of multiple
omics modalities in single cells, most single-cell datasets include only one modality. A major …
omics modalities in single cells, most single-cell datasets include only one modality. A major …
[HTML][HTML] Dissection of artifactual and confounding glial signatures by single-cell sequencing of mouse and human brain
A key aspect of nearly all single-cell sequencing experiments is dissociation of intact tissues
into single-cell suspensions. While many protocols have been optimized for optimal cell …
into single-cell suspensions. While many protocols have been optimized for optimal cell …
Computational approaches and challenges in spatial transcriptomics
The development of spatial transcriptomics (ST) technologies has transformed genetic
research from a single-cell data level to a two-dimensional spatial coordinate system and …
research from a single-cell data level to a two-dimensional spatial coordinate system and …
Single-cell multiomics
E Flynn, A Almonte-Loya… - Annual review of …, 2023 - annualreviews.org
Single-cell RNA sequencing methods have led to improved understanding of the
heterogeneity and transcriptomic states present in complex biological systems. Recently, the …
heterogeneity and transcriptomic states present in complex biological systems. Recently, the …
Modal-nexus auto-encoder for multi-modality cellular data integration and imputation
Heterogeneous feature spaces and technical noise hinder the cellular data integration and
imputation. The high cost of obtaining matched data across modalities further restricts …
imputation. The high cost of obtaining matched data across modalities further restricts …
Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics
From single-cell RNA-sequencing (scRNA-seq) and spatial transcriptomics (ST), one can
extract high-dimensional gene expression patterns that can be described by intercellular …
extract high-dimensional gene expression patterns that can be described by intercellular …
Cross-linked unified embedding for cross-modality representation learning
Multi-modal learning is essential for understanding information in the real world. Jointly
learning from multi-modal data enables global integration of both shared and modality …
learning from multi-modal data enables global integration of both shared and modality …
Mapping hormone-regulated cell-cell interaction networks in the human breast at single-cell resolution
The rise and fall of estrogen and progesterone across menstrual cycles and during
pregnancy regulates breast development and modifies cancer risk. How these hormones …
pregnancy regulates breast development and modifies cancer risk. How these hormones …