Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

VN Uversky, CJ Oldfield… - Journal of Molecular …, 2005 - Wiley Online Library
Regulation, recognition and cell signaling involve the coordinated actions of many players.
To achieve this coordination, each participant must have a valid identification (ID) that is …

Computer-aided antibody design

D Kuroda, H Shirai, MP Jacobson… - … engineering, design & …, 2012 - academic.oup.com
Recent clinical trials using antibodies with low toxicity and high efficiency have raised
expectations for the development of next-generation protein therapeutics. However, the …

Variants of the antibody herceptin that interact with HER2 and VEGF at the antigen binding site

J Bostrom, SF Yu, D Kan, BA Appleton, CV Lee… - Science, 2009 - science.org
The interface between antibody and antigen is often depicted as a lock and key, suggesting
that an antibody surface can accommodate only one antigen. Here, we describe an antibody …

Polyreactivity of antibody molecules

AL Notkins - Trends in immunology, 2004 - cell.com
The'lock and key'hypothesis of antigen–antibody interaction has long dominated
immunological thinking. However, studies demonstrating the existence of a large number of …

Human non-neutralizing HIV-1 envelope monoclonal antibodies limit the number of founder viruses during SHIV mucosal infection in rhesus macaques

S Santra, GD Tomaras, R Warrier, NI Nicely… - PLoS …, 2015 - journals.plos.org
HIV-1 mucosal transmission begins with virus or virus-infected cells moving through mucus
across mucosal epithelium to infect CD4+ T cells. Although broadly neutralizing antibodies …

Molecularly imprinted polymers with specific recognition for macromolecules and proteins

NM Bergmann, NA Peppas - Progress in Polymer Science, 2008 - Elsevier
The hierarchical system of recognition in nature is based on interaction between the
smallest elements in a matrix such as molecules and the cumulative interactions of larger …

Directed evolution of a bright variant of mCherry: suppression of nonradiative decay by fluorescence lifetime selections

S Mukherjee, P Manna, ST Hung… - The Journal of …, 2022 - ACS Publications
The approximately linear scaling of fluorescence quantum yield (ϕ) with fluorescence
lifetime (τ) in fluorescent proteins (FPs) has inspired engineering of brighter fluorophores …

Specificity, polyspecificity and heterospecificity of antibody-antigen recognition

MHV Van Regenmortel… - … : A Review of 20 Years of …, 2019 - Springer
The concept of antibody specificity is analyzed and shown to reside in the ability of an
antibody to discriminate between two antigens. Initially antibody specificity was attributed to …

Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin

T Wlodarski, B Zagrovic - Proceedings of the National …, 2009 - National Acad Sciences
Noncovalent binding interactions between proteins are the central physicochemical
phenomenon underlying biological signaling and functional control on the molecular level …

Breaking the law: unconventional strategies for antibody diversification

A Kanyavuz, A Marey-Jarossay… - Nature Reviews …, 2019 - nature.com
Antibodies are essential components of adaptive immunity. A typical antibody repertoire
comprises an enormous diversity of antigen-binding specificities, which are generated by …