Advances in urinary proteome analysis and biomarker discovery

D Fliser, J Novak, V Thongboonkerd… - Journal of the …, 2007 - journals.lww.com
Noninvasive diagnosis of kidney diseases and assessment of the prognosis are still
challenges in clinical nephrology. Definition of biomarkers on the basis of proteome …

Approaching clinical proteomics: current state and future fields of application in fluid proteomics

R Apweiler, C Aslanidis, T Deufel… - Clinical chemistry and …, 2009 - degruyter.com
The field of clinical proteomics offers opportunities to identify new disease biomarkers in
body fluids, cells and tissues. These biomarkers can be used in clinical applications for …

[PDF][PDF] Do we need hundreds of classifiers to solve real world classification problems?

M Fernández-Delgado, E Cernadas, S Barro… - The journal of machine …, 2014 - jmlr.org
We evaluate 179 classifiers arising from 17 families (discriminant analysis, Bayesian, neural
networks, support vector machines, decision trees, rule-based classifiers, boosting, bagging …

Scalable variational Gaussian process classification

J Hensman, A Matthews… - Artificial Intelligence and …, 2015 - proceedings.mlr.press
Gaussian process classification is a popular method with a number of appealing properties.
We show how to scale the model within a variational inducing point framework, out …

[PDF][PDF] Stochastic variational inference

MD Hoffman, DM Blei, C Wang, J Paisley - Journal of Machine Learning …, 2013 - jmlr.org
We develop stochastic variational inference, a scalable algorithm for approximating
posterior distributions. We develop this technique for a large class of probabilistic models …

Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease

DM Good, P Zürbig, A Argiles, HW Bauer… - Molecular & cellular …, 2010 - ASBMB
Because of its availability, ease of collection, and correlation with physiology and pathology,
urine is an attractive source for clinical proteomics/peptidomics. However, the lack of …

Explaining variational approximations

JT Ormerod, MP Wand - The American Statistician, 2010 - Taylor & Francis
Variational approximations facilitate approximate inference for the parameters in complex
statistical models and provide fast, deterministic alternatives to Monte Carlo methods …

Adversarial examples, uncertainty, and transfer testing robustness in gaussian process hybrid deep networks

J Bradshaw, AGG Matthews, Z Ghahramani - arXiv preprint arXiv …, 2017 - arxiv.org
Deep neural networks (DNNs) have excellent representative power and are state of the art
classifiers on many tasks. However, they often do not capture their own uncertainties well …

[PDF][PDF] Approximations for binary Gaussian process classification

H Nickisch, CE Rasmussen - Journal of Machine Learning Research, 2008 - jmlr.org
We provide a comprehensive overview of many recent algorithms for approximate inference
in Gaussian process models for probabilistic binary classification. The relationships between …

Revealing hidden patterns in deep neural network feature space continuum via manifold learning

MT Islam, Z Zhou, H Ren, MB Khuzani, D Kapp… - Nature …, 2023 - nature.com
Deep neural networks (DNNs) extract thousands to millions of task-specific features during
model training for inference and decision-making. While visualizing these features is critical …