The oxDNA model of Deoxyribonucleic acid has been applied widely to systems in biology,
biophysics and nanotechnology. It is currently available via two independent open source …

Gels are low-packing arrested states of matter which are able to support stress. On cooling,
limited valence colloidal particles form open networks stabilized by the progressive increase …

Liquid–liquid phase separation (LLPS) is widely utilized by the cell to organize and regulate
various biochemical processes. Although the LLPS of proteins is known to occur in a …

The rapid development of self-assembly approaches has enabled the creation of materials
with desired organization of nanoscale components. However, achieving dynamic control …

Multivalent proteins and nucleic acids can self-assemble into biomolecular condensates that
contribute to compartmentalize the cell interior. Computer simulations offer a unique view to …

Biomolecular condensates formed via liquid–liquid phase separation (LLPS) play a crucial
role in the spatiotemporal organization of the cell material. Nucleic acids can act as critical …

Proteins containing intrinsically disordered regions (IDRs) are ubiquitous within
biomolecular condensates, which are liquid-like compartments within cells formed through …

We test the relative performances of two different approaches to the computation of forces for
molecular dynamics simulations on graphics processing units. A “vertex‐based” approach …

One of the key mechanisms employed by cells to control their spatiotemporal organization is
the formation and dissolution of phase-separated condensates. The balance between …

Through extensive state-of-the-art numerical simulations, we study the behavior of the
dipolar hard sphere model at low temperatures and low densities, shedding light on a region …