Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

AM Piper, J Batovska, NOI Cogan, J Weiss… - …, 2019 - academic.oup.com
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

N Galtier, B Nabholz, S Glémin, GDD Hurst - Molecular ecology, 2009 - Wiley Online Library
Over the last three decades, mitochondrial DNA has been the most popular marker of
molecular diversity, for a combination of technical ease‐of‐use considerations, and …

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

R Allio, A Schomaker‐Bastos… - Molecular ecology …, 2020 - Wiley Online Library
Thanks to the development of high‐throughput sequencing technologies, target enrichment
sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routine inference …

Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses

F Keck, M Couton, F Altermatt - Molecular Ecology Resources, 2023 - Wiley Online Library
Assessment of biodiversity using metabarcoding data, such as from bulk or environmental
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …

Validation and development of COI metabarcoding primers for freshwater macroinvertebrate bioassessment

V Elbrecht, F Leese - Frontiers in Environmental Science, 2017 - frontiersin.org
A central challenge in the present era of biodiversity loss is to assess and manage human
impacts on freshwater ecosystems. Macroinvertebrates are an important group for such …

Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding

H Krehenwinkel, M Wolf, JY Lim, AJ Rominger… - Scientific reports, 2017 - nature.com
Amplicon based metabarcoding promises rapid and cost-efficient analyses of species
composition. However, it is disputed whether abundance estimates can be derived from …

DNA barcoding Australia's fish species

RD Ward, TS Zemlak, BH Innes… - … Transactions of the …, 2005 - royalsocietypublishing.org
Two hundred and seven species of fish, mostly Australian marine fish, were sequenced
(barcoded) for a 655 bp region of the mitochondrial cytochrome oxidase subunit I gene …

Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator

PDN Hebert, EH Penton, JM Burns… - Proceedings of the …, 2004 - National Acad Sciences
Astraptes fulgerator, first described in 1775, is a common and widely distributed neotropical
skipper butterfly (Lepidoptera: Hesperiidae). We combine 25 years of natural history …

Identification of birds through DNA barcodes

PDN Hebert, MY Stoeckle, TS Zemlak, CM Francis - PLoS biology, 2004 - journals.plos.org
Short DNA sequences from a standardized region of the genome provide a DNA barcode for
identifying species. Compiling a public library of DNA barcodes linked to named specimens …

The incomplete natural history of mitochondria

JWO Ballard, MC Whitlock - Molecular ecology, 2004 - Wiley Online Library
Mitochondrial DNA (mtDNA) has been used to study molecular ecology and
phylogeography for 25 years. Much important information has been gained in this way, but it …