Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress

PK Papolu, M Ramakrishnan, S Mullasseri… - Frontiers in plant …, 2022 - frontiersin.org
Long terminal repeat retrotransposons (LTR retrotransposons) are the most abundant group
of mobile genetic elements in eukaryotic genomes and are essential in organizing genomic …

Omics approaches in Allium research: Progress and way ahead

K Khandagale, R Krishna, P Roylawar, AB Ade… - PeerJ, 2020 - peerj.com
Background The genus Allium (Family: Amaryllidaceae) is an economically important group
of crops cultivated worldwide for their use as a vegetable and spices. Alliums are also well …

Chromosome-level genomes of three key Allium crops and their trait evolution

F Hao, X Liu, B Zhou, Z Tian, L Zhou, H Zong, J Qi… - Nature …, 2023 - nature.com
Allium crop breeding remains severely hindered due to the lack of high-quality reference
genomes. Here we report high-quality chromosome-level genome assemblies for three key …

Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum

V Peška, T Mandáková, V Ihradská… - International Journal of …, 2019 - mdpi.com
Knowledge of the fascinating world of DNA repeats is continuously being enriched by newly
identified elements and their hypothetical or well-established biological relevance. Genomic …

Tandem repeats of Allium fistulosum associated with major chromosomal landmarks

IV Kirov, AV Kiseleva, K Van Laere, N Van Roy… - Molecular Genetics and …, 2017 - Springer
Tandem repeats are often associated with important chromosomal landmarks, such as
centromeres, telomeres, subtelomeric, and other heterochromatic regions, and can be good …

Identification and characterization of abundant repetitive sequences in Allium cepa

J Fu, H Zhang, F Guo, L Ma, J Wu, M Yue, X Zheng… - Scientific reports, 2019 - nature.com
Species of the genus Allium are well known for their large genomes. Allium cepa is of great
economic significance. Among vegetables, it ranks second after tomato in terms of the global …

BAL31-NGS approach for identification of telomeres de novo in large genomes

V Peška, Z Sitová, P Fajkus, J Fajkus - Methods, 2017 - Elsevier
This article describes a novel method to identify as yet undiscovered telomere sequences,
which combines next generation sequencing (NGS) with BAL31 digestion of high molecular …

Functional Allium fistulosum Centromeres Comprise Arrays of a Long Satellite Repeat, Insertions of Retrotransposons and Chloroplast DNA

I Kirov, S Odintsov, M Omarov, S Gvaramiya… - Frontiers in Plant …, 2020 - frontiersin.org
The centromere is a unique part of the chromosome combining a conserved function with an
extreme variability in its DNA sequence. Most of our knowledge about the functional …

SIRE1 retrotransposons in barley (Hordeum vulgare L.)

B Cakmak, S Marakli, N Gozukirmizi - Russian journal of genetics, 2015 - Springer
Sireviruses are genera of copia LTR retrotransposons with a unique genome structure
among retrotransposons. Barley (Hordeum vulgare L.) is an economically important plant. In …

High resolution physical mapping of single gene fragments on pachytene chromosome 4 and 7 of Rosa

IV Kirov, K Van Laere, LI Khrustaleva - BMC genetics, 2015 - Springer
Background Rosaceae is a family containing many economically important fruit and
ornamental species. Although fluorescence in situ hybridization (FISH)-based physical …