Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context

V Robin, A Bodein, MP Scott-Boyer… - Frontiers in Molecular …, 2022 - frontiersin.org
At the heart of the cellular machinery through the regulation of cellular functions, protein–
protein interactions (PPIs) have a significant role. PPIs can be analyzed with network …

Open source libraries and frameworks for biological data visualisation: A guide for developers

R Wang, Y Perez‐Riverol, H Hermjakob… - …, 2015 - Wiley Online Library
Recent advances in high‐throughput experimental techniques have led to an exponential
increase in both the size and the complexity of the data sets commonly studied in biology …

MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities

G Launay, R Salza, D Multedo… - Nucleic Acids …, 2015 - academic.oup.com
Abstract MatrixDB (http://matrixdb. ibcp. fr) is a freely available database focused on
interactions established by extracellular proteins and polysaccharides. It is an active …

Platelet proteome reveals novel pathways of platelet activation and platelet-mediated immunoregulation in dengue

MRO Trugilho, ED Hottz, GVF Brunoro… - PLoS …, 2017 - journals.plos.org
Dengue is the most prevalent human arbovirus disease worldwide. Dengue virus (DENV)
infection causes syndromes varying from self-limiting febrile illness to severe dengue …

Integrated web visualizations for protein-protein interaction databases

F Jeanquartier, C Jean-Quartier, A Holzinger - BMC bioinformatics, 2015 - Springer
Background Understanding living systems is crucial for curing diseases. To achieve this task
we have to understand biological networks based on protein-protein interactions …

Genome sequencing data analysis for rare disease gene discovery

UKI Umlai, DK Bangarusamy, X Estivill… - Briefings in …, 2022 - academic.oup.com
Rare diseases occur in a smaller proportion of the general population, which is variedly
defined as less than 200 000 individuals (US) or in less than 1 in 2000 individuals (Europe) …

Protein–Protein Interaction (PPI) Network of Zebrafish Oestrogen Receptors: A Bioinformatics Workflow

RA Zainal-Abidin, N Afiqah-Aleng… - Life, 2022 - mdpi.com
Protein–protein interaction (PPI) is involved in every biological process that occurs within an
organism. The understanding of PPI is essential for deciphering the cellular behaviours in a …

[图书][B] Protein-protein interactions

KM Poluri, K Gulati, S Sarkar - 2021 - Springer
Inside the cell, a complex network of dynamic molecular interaction takes place without
interruption. Such molecular interactions are like the strings pulled by the puppeteer in order …

WebGIVI: a web-based gene enrichment analysis and visualization tool

L Sun, Y Zhu, ASMA Mahmood, CO Tudor, J Ren… - BMC …, 2017 - Springer
Background A major challenge of high throughput transcriptome studies is presenting the
data to researchers in an interpretable format. In many cases, the outputs of such studies are …

Automated testing of perceptible web page elements

H Shaath - US Patent 10,296,563, 2019 - Google Patents
Methods and systems are provided for testing graphical elements within a graphical user
interface associated with a computer file, such as a web page. One exemplary method …