Adaptation of cells to new environments
The evolutionary success of an organism is a testament to its inherent capacity to keep pace
with environmental conditions that change over short and long periods. Mechanisms …
with environmental conditions that change over short and long periods. Mechanisms …
Regulation by transcription factors in bacteria: beyond description
E Balleza, LN Lopez-Bojorquez… - FEMS microbiology …, 2008 - academic.oup.com
Transcription is an essential step in gene expression and its understanding has been one of
the major interests in molecular and cellular biology. By precisely tuning gene expression …
the major interests in molecular and cellular biology. By precisely tuning gene expression …
RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12
A Santos-Zavaleta, H Salgado… - Nucleic acids …, 2019 - academic.oup.com
RegulonDB, first published 20 years ago, is a comprehensive electronic resource about
regulation of transcription initiation of Escherichia coli K-12 with decades of knowledge from …
regulation of transcription initiation of Escherichia coli K-12 with decades of knowledge from …
Mechanisms and evolution of control logic in prokaryotic transcriptional regulation
SAFT van Hijum, MH Medema… - … and Molecular Biology …, 2009 - Am Soc Microbiol
SUMMARY A major part of organismal complexity and versatility of prokaryotes resides in
their ability to fine-tune gene expression to adequately respond to internal and external …
their ability to fine-tune gene expression to adequately respond to internal and external …
Evolution of transcriptional regulatory circuits in bacteria
JC Perez, EA Groisman - Cell, 2009 - cell.com
Related organisms typically respond to a given cue by altering the level or activity of
orthologous transcription factors, which, paradoxically, often regulate expression of distinct …
orthologous transcription factors, which, paradoxically, often regulate expression of distinct …
Distance matters: the impact of gene proximity in bacterial gene regulation
O Pulkkinen, R Metzler - Physical review letters, 2013 - APS
Following recent discoveries of colocalization of downstream-regulating genes in living
cells, the impact of the spatial distance between such genes on the kinetics of gene product …
cells, the impact of the spatial distance between such genes on the kinetics of gene product …
Indirect and suboptimal control of gene expression is widespread in bacteria
Gene regulation in bacteria is usually described as an adaptive response to an
environmental change so that genes are expressed when they are required. We instead …
environmental change so that genes are expressed when they are required. We instead …
The regulon of Brucella abortus two-component system BvrR/BvrS reveals the coordination of metabolic pathways required for intracellular life
O Rivas-Solano, M Van der Henst, A Castillo-Zeledón… - PLoS …, 2022 - journals.plos.org
Brucella abortus is a facultative intracellular pathogen causing a severe zoonotic disease
worldwide. The two-component regulatory system (TCS) BvrR/BvrS of B. abortus is …
worldwide. The two-component regulatory system (TCS) BvrR/BvrS of B. abortus is …
Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder
A Estévez-Torres, C Crozatier… - Proceedings of the …, 2009 - National Acad Sciences
To understand non-trivial biological functions, it is crucial to develop minimal synthetic
models that capture their basic features. Here, we demonstrate a sequence-independent …
models that capture their basic features. Here, we demonstrate a sequence-independent …
Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group
TR Schmidt, EJ Scott, DW Dyer - BMC genomics, 2011 - Springer
Abstract Background The Bacillus cereus sensu lato group consists of six species (B.
anthracis, B. cereus, B. mycoides, B. pseudomycoides, B. thuringiensis, and B …
anthracis, B. cereus, B. mycoides, B. pseudomycoides, B. thuringiensis, and B …