Adaptation of cells to new environments

AN Brooks, S Turkarslan, KD Beer… - … Systems Biology and …, 2011 - Wiley Online Library
The evolutionary success of an organism is a testament to its inherent capacity to keep pace
with environmental conditions that change over short and long periods. Mechanisms …

Regulation by transcription factors in bacteria: beyond description

E Balleza, LN Lopez-Bojorquez… - FEMS microbiology …, 2008 - academic.oup.com
Transcription is an essential step in gene expression and its understanding has been one of
the major interests in molecular and cellular biology. By precisely tuning gene expression …

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

A Santos-Zavaleta, H Salgado… - Nucleic acids …, 2019 - academic.oup.com
RegulonDB, first published 20 years ago, is a comprehensive electronic resource about
regulation of transcription initiation of Escherichia coli K-12 with decades of knowledge from …

Mechanisms and evolution of control logic in prokaryotic transcriptional regulation

SAFT van Hijum, MH Medema… - … and Molecular Biology …, 2009 - Am Soc Microbiol
SUMMARY A major part of organismal complexity and versatility of prokaryotes resides in
their ability to fine-tune gene expression to adequately respond to internal and external …

Evolution of transcriptional regulatory circuits in bacteria

JC Perez, EA Groisman - Cell, 2009 - cell.com
Related organisms typically respond to a given cue by altering the level or activity of
orthologous transcription factors, which, paradoxically, often regulate expression of distinct …

Distance matters: the impact of gene proximity in bacterial gene regulation

O Pulkkinen, R Metzler - Physical review letters, 2013 - APS
Following recent discoveries of colocalization of downstream-regulating genes in living
cells, the impact of the spatial distance between such genes on the kinetics of gene product …

Indirect and suboptimal control of gene expression is widespread in bacteria

MN Price, AM Deutschbauer, JM Skerker… - Molecular systems …, 2013 - embopress.org
Gene regulation in bacteria is usually described as an adaptive response to an
environmental change so that genes are expressed when they are required. We instead …

The regulon of Brucella abortus two-component system BvrR/BvrS reveals the coordination of metabolic pathways required for intracellular life

O Rivas-Solano, M Van der Henst, A Castillo-Zeledón… - PLoS …, 2022 - journals.plos.org
Brucella abortus is a facultative intracellular pathogen causing a severe zoonotic disease
worldwide. The two-component regulatory system (TCS) BvrR/BvrS of B. abortus is …

Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder

A Estévez-Torres, C Crozatier… - Proceedings of the …, 2009 - National Acad Sciences
To understand non-trivial biological functions, it is crucial to develop minimal synthetic
models that capture their basic features. Here, we demonstrate a sequence-independent …

Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group

TR Schmidt, EJ Scott, DW Dyer - BMC genomics, 2011 - Springer
Abstract Background The Bacillus cereus sensu lato group consists of six species (B.
anthracis, B. cereus, B. mycoides, B. pseudomycoides, B. thuringiensis, and B …