Mixed quantum mechanical/molecular mechanical molecular dynamics simulations of biological systems in ground and electronically excited states
E Brunk, U Rothlisberger - Chemical reviews, 2015 - ACS Publications
The quantum nature of electrons and nuclei is manifested in countless biological events
including the rearrangements of electrons in biochemical reactions, electron and proton …
including the rearrangements of electrons in biochemical reactions, electron and proton …
Theory and simulation of the ultrafast double-bond isomerization of biological chromophores
Ultrafast processes in light-absorbing proteins have been implicated in the primary step in
the light-to-energy conversion and the initialization of photoresponsive biological functions …
the light-to-energy conversion and the initialization of photoresponsive biological functions …
An overview of molecular modeling for drug discovery with specific illustrative examples of applications
M Aminpour, C Montemagno, JA Tuszynski - Molecules, 2019 - mdpi.com
In this paper we review the current status of high-performance computing applications in the
general area of drug discovery. We provide an introduction to the methodologies applied at …
general area of drug discovery. We provide an introduction to the methodologies applied at …
G protein–coupled receptor rhodopsin
K Palczewski - Annu. Rev. Biochem., 2006 - annualreviews.org
The rhodopsin crystal structure provides a structural basis for understanding the function of
this and other G protein–coupled receptors (GPCRs). The major structural motifs observed …
this and other G protein–coupled receptors (GPCRs). The major structural motifs observed …
Identification Of Two Distinct Inactive Conformations Of The Beta-2 Adrenergic Receptor Reconciles Structural And Biochemical Observations
Diane Lynch1, Dow Hurst1, Patti Reggio1, Alan Grossfield2, Mike Pitman3. 1University of
North Carolina, Greensboro, Greensboro, NC, USA, 2University of Rochester School of …
North Carolina, Greensboro, Greensboro, NC, USA, 2University of Rochester School of …
Trajectory‐based nonadiabatic dynamics with time‐dependent density functional theory
Understanding the fate of an electronically excited molecule constitutes an important task for
theoretical chemistry, and practical implications range from the interpretation of atto‐and …
theoretical chemistry, and practical implications range from the interpretation of atto‐and …
A solvent-driven molecular spring
Z Zhang, C Han, G Yu, F Huang - Chemical Science, 2012 - pubs.rsc.org
A solvent-driven doubly threaded rotaxane dimer based on an amino-modified copillar [5]
arene was prepared using bis (trifluoromethyl) phenyl isocyanate as stoppers. By …
arene was prepared using bis (trifluoromethyl) phenyl isocyanate as stoppers. By …
Tracking the excited-state time evolution of the visual pigment with multiconfigurational quantum chemistry
The primary event that initiates vision is the photoinduced isomerization of retinal in the
visual pigment rhodopsin (Rh). Here, we use a scaled quantum mechanics/molecular …
visual pigment rhodopsin (Rh). Here, we use a scaled quantum mechanics/molecular …
Structure, initial excited-state relaxation, and energy storage of rhodopsin resolved at the multiconfigurational perturbation theory level
T Andruniów, N Ferré… - Proceedings of the …, 2004 - National Acad Sciences
We demonstrate that a “brute force” quantum chemical calculation based on an ab initio
multiconfigurational second order perturbation theory approach implemented in a quantum …
multiconfigurational second order perturbation theory approach implemented in a quantum …
T-ray sensing and imaging
T-ray wavelengths are long enough to pass through dry, nonpolar objects opaque at visible
wavelengths, but short enough to be manipulated by optical components to form an image …
wavelengths, but short enough to be manipulated by optical components to form an image …