The population genetics of pathogenic Escherichia coli

E Denamur, O Clermont, S Bonacorsi… - Nature Reviews …, 2021 - nature.com
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …

Escherichia coli in Europe: An Overview

N Allocati, M Masulli, MF Alexeyev, C Di Ilio - International journal of …, 2013 - mdpi.com
Escherichia coli remains one of the most frequent causes of several common bacterial
infections in humans and animals. E. coli is the prominent cause of enteritis, urinary tract …

Role played by the environment in the emergence and spread of antimicrobial resistance (AMR) through the food chain

EFSA Panel on Biological Hazards (BIOHAZ)… - Efsa …, 2021 - Wiley Online Library
The role of food‐producing environments in the emergence and spread of antimicrobial
resistance (AMR) in EU plant‐based food production, terrestrial animals (poultry, cattle and …

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

HB Nielsen, M Almeida, AS Juncker… - Nature …, 2014 - nature.com
Most current approaches for analyzing metagenomic data rely on comparisons to reference
genomes, but the microbial diversity of many environments extends far beyond what is …

Phosphoethanolamine cellulose: a naturally produced chemically modified cellulose

W Thongsomboon, DO Serra, A Possling… - Science, 2018 - science.org
Cellulose is a major contributor to the chemical and mechanical properties of plants and
assumes structural roles in bacterial communities termed biofilms. We find that Escherichia …

Advanced biosensors for detection of pathogens related to livestock and poultry

J Vidic, M Manzano, CM Chang, N Jaffrezic-Renault - Veterinary research, 2017 - Springer
Infectious animal diseases caused by pathogenic microorganisms such as bacteria and
viruses threaten the health and well-being of wildlife, livestock, and human populations, limit …

E. coli as an All-Rounder: The Thin Line Between Commensalism and Pathogenicity

A Leimbach, J Hacker, U Dobrindt - Between pathogenicity and …, 2013 - Springer
Escherichia coli is a paradigm for a versatile bacterial species which comprises harmless
commensal as well as different pathogenic variants with the ability to either cause intestinal …

The microbial ecology of Escherichia coli in the vertebrate gut

E Foster-Nyarko, MJ Pallen - FEMS microbiology reviews, 2022 - academic.oup.com
Escherichia coli has a rich history as biology's 'rock star', driving advances across many
fields. In the wild, E. coli resides innocuously in the gut of humans and animals but is also a …

[HTML][HTML] Non-O157 Shiga toxin-producing Escherichia coli—A poorly appreciated enteric pathogen: Systematic review

E Valilis, A Ramsey, S Sidiq, HL DuPont - International Journal of Infectious …, 2018 - Elsevier
Non-O157 strains of Shiga toxin-producing Escherichia coli (STEC) are more common
causes of acute diarrhea than the better-known O157 strains and have the potential for large …

Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study

T Wu, Z Zhang, B Liu, D Hou, Y Liang, J Zhang, P Shi - BMC genomics, 2013 - Springer
Background Elucidating gut microbiota among gallstone patients as well as the complex
bacterial colonization of cholesterol gallstones may help in both the prediction and …