[HTML][HTML] Evasion of host immune defenses by human papillomavirus

JA Westrich, CJ Warren, D Pyeon - Virus research, 2017 - Elsevier
A majority of human papillomavirus (HPV) infections are asymptomatic and self-resolving in
the absence of medical interventions. Various innate and adaptive immune responses, as …

[HTML][HTML] Roles of APOBEC3A and APOBEC3B in human papillomavirus infection and disease progression

CJ Warren, JA Westrich, KV Doorslaer, D Pyeon - Viruses, 2017 - mdpi.com
The apolipoprotein B messenger RNA-editing, enzyme-catalytic, polypeptide-like 3
(APOBEC3) family of cytidine deaminases plays an important role in the innate immune …

[HTML][HTML] Mutation patterns of human SARS-CoV-2 and bat RaTG13 coronavirus genomes are strongly biased towards C> U transitions, indicating rapid evolution in …

R Matyášek, A Kovařík - Genes, 2020 - mdpi.com
The pandemic caused by the spread of SARS-CoV-2 has led to considerable interest in its
evolutionary origin and genome structure. Here, we analyzed mutation patterns in 34 human …

Genomic and evolutionary comparison between SARS-CoV-2 and other human coronaviruses

Z Chen, SS Boon, MH Wang, RWY Chan… - Journal of virological …, 2021 - Elsevier
Three highly pathogenic human coronaviruses can cause severe acute respiratory
syndrome (SARS-CoV, SARS-CoV-2 and MERS-CoV). Although phylogenetic analyses …

Dinucleotide composition in animal RNA viruses is shaped more by virus family than by host species

F Di Giallonardo, TE Schlub, M Shi… - Journal of virology, 2017 - Am Soc Microbiol
Viruses use the cellular machinery of their hosts for replication. It has therefore been
proposed that the nucleotide and dinucleotide compositions of viruses should match those …

[HTML][HTML] DNA tumor virus regulation of host DNA methylation and its implications for immune evasion and oncogenesis

SK Kuss-Duerkop, JA Westrich, D Pyeon - Viruses, 2018 - mdpi.com
Viruses have evolved various mechanisms to evade host immunity and ensure efficient viral
replication and persistence. Several DNA tumor viruses modulate host DNA …

The slowing rate of CpG depletion in SARS-CoV-2 genomes is consistent with adaptations to the human host

A Kumar, N Goyal, N Saranathan… - Molecular Biology …, 2022 - academic.oup.com
Depletion of CpG dinucleotides in severe acute respiratory syndrome coronavirus-2 (SARS-
CoV-2) genomes has been linked to virus evolution, host-switching, virus replication, and …

Role of the host restriction factor APOBEC3 on papillomavirus evolution

CJ Warren, K Van Doorslaer, A Pandey… - Virus …, 2015 - academic.oup.com
More than 270 different types of papillomaviruses have been discovered in a wide array of
animal species. Despite the great diversity of papillomaviruses, little is known about the …

[HTML][HTML] Diverse RNA viruses of arthropod origin in the blood of fruit bats suggest a link between bat and arthropod viromes

AJ Bennett, T Bushmaker, K Cameron, A Ondzie… - Virology, 2019 - Elsevier
Bats host diverse viruses due to their unique ecology, behavior, and immunology. However,
the role of other organisms with which bats interact in nature is understudied as a contributor …

Advances in nutritional epigenetics—A fresh perspective for an old idea. Lessons learned, limitations, and future directions

L Sedley - Epigenetics Insights, 2020 - journals.sagepub.com
Nutritional epigenetics is a rapidly expanding field of research, and the natural modulation of
the genome is a non-invasive, sustainable, and personalized alternative to gene-editing for …