Next-generation analysis of gene expression regulation–comparing the roles of synthesis and degradation

J McManus, Z Cheng, C Vogel - Molecular BioSystems, 2015 - pubs.rsc.org
Technological advances now enable routine measurement of mRNA and protein
abundances, and estimates of their rates of synthesis and degradation that inform on their …

Exploiting interdata relationships in next-generation proteomics analysis

B Vitrinel, HWL Koh, FM Kar, S Maity… - Molecular & Cellular …, 2019 - ASBMB
Mass spectrometry based proteomics and other technologies have matured to enable
routine quantitative, system-wide analysis of concentrations, modifications, and interactions …

Integration of a multi-omics stem cell differentiation dataset using a dynamical model

PR van den Berg, NMLP Bérenger-Currias… - PLoS …, 2023 - journals.plos.org
Stem cell differentiation is a highly dynamic process involving pervasive changes in gene
expression. The large majority of existing studies has characterized differentiation at the …

Stable maternal proteins underlie distinct transcriptome, translatome, and proteome reprogramming during mouse oocyte-to-embryo transition

H Zhang, S Ji, K Zhang, Y Chen, J Ming, F Kong… - Genome Biology, 2023 - Springer
Background The oocyte-to-embryo transition (OET) converts terminally differentiated
gametes into a totipotent embryo and is critically controlled by maternal mRNAs and …

Electrical stimulation directs migration, enhances and orients cell division and upregulates the chemokine receptors CXCR4 and CXCR2 in endothelial cells

F Cunha, AM Rajnicek, CD McCaig - Journal of Vascular Research, 2019 - karger.com
Natural direct current electric fields (DC EFs) within tissues undergoing angiogenesis have
the potential to influence vessel formation, but how they affect endothelial cells is not clear …

Proteomics and phosphoproteomics in precision medicine: applications and challenges

G Giudice, E Petsalaki - Briefings in bioinformatics, 2019 - academic.oup.com
Recent advances in proteomics allow the accurate measurement of abundances for
thousands of proteins and phosphoproteins from multiple samples in parallel. Therefore, for …

Dynamic movement and turnover of extracellular matrices during tissue development and maintenance

Y Matsubayashi - Fly, 2022 - Taylor & Francis
Extracellular matrices (ECMs) are essential for the architecture and function of animal
tissues. ECMs have been thought to be highly stable structures; however, too much stability …

Low BACH2 expression predicts adverse outcome in chronic lymphocytic leukaemia

C Ciardullo, K Szoltysek, P Zhou, M Pietrowska… - Cancers, 2021 - mdpi.com
Simple Summary Chronic lymphocytic leukaemia (CLL) is the most frequent type of
leukaemia with a highly variable presentation, clinical course, and outcome. The overall aim …

Mass-Spectrometry-Based Near-Complete Draft of the Saccharomyces cerevisiae Proteome

Y Gao, L Ping, D Duong, C Zhang… - Journal of Proteome …, 2021 - ACS Publications
Proteomics approaches designed to catalogue all open reading frames (ORFs) under a
defined set of growth conditions of an organism have flourished in recent years. However …

Modeling protein destiny in developing fruit

I Belouah, C Nazaret, P Pétriacq, S Prigent… - Plant …, 2019 - academic.oup.com
Protein synthesis and degradation are essential processes that regulate cell status. Because
labeling in bulky organs, such as fruits, is difficult, we developed a modeling approach to …