Genome sequencing and population genomics in non-model organisms

H Ellegren - Trends in ecology & evolution, 2014 - cell.com
High-throughput sequencing technologies are revolutionizing the life sciences. The past 12
months have seen a burst of genome sequences from non-model organisms, in each case …

[HTML][HTML] Implementing and testing the multispecies coalescent model: a valuable paradigm for phylogenomics

SV Edwards, Z Xi, A Janke, BC Faircloth… - Molecular phylogenetics …, 2016 - Elsevier
In recent articles published in Molecular Phylogenetics and Evolution, Mark Springer and
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …

[HTML][HTML] Species list of the European herpetofauna–2020 update by the Taxonomic Committee of the Societas Europaea Herpetologica

J Speybroeck, W Beukema, C Dufresnes, U Fritz… - Amphibia-Reptilia, 2020 - brill.com
The last species list of the European herpetofauna was published by Speybroeck, Beukema
and Crochet (2010). In the meantime, ongoing research led to numerous taxonomic …

ASTRAL: genome-scale coalescent-based species tree estimation

S Mirarab, R Reaz, MS Bayzid, T Zimmermann… - …, 2014 - academic.oup.com
Motivation: Species trees provide insight into basic biology, including the mechanisms of
evolution and how it modifies biomolecular function and structure, biodiversity and co …

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …

Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016 - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …

Mitochondrial phylogenomics of Hemiptera reveals adaptive innovations driving the diversification of true bugs

H Li, JM Leavengood Jr… - … of the Royal …, 2017 - royalsocietypublishing.org
Hemiptera, the largest non-holometabolous order of insects, represents approximately 7% of
metazoan diversity. With extraordinary life histories and highly specialized morphological …

Phylotranscriptomic consolidation of the jawed vertebrate timetree

I Irisarri, D Baurain, H Brinkmann, F Delsuc… - Nature ecology & …, 2017 - nature.com
Phylogenomics is extremely powerful but introduces new challenges as no agreement exists
on 'standards' for data selection, curation and tree inference. We use jawed vertebrates …

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

RE Green, EL Braun, J Armstrong, D Earl, N Nguyen… - Science, 2014 - science.org
INTRODUCTION Crocodilians and birds are the two extant clades of archosaurs, a group
that includes the extinct dinosaurs and pterosaurs. Fossils suggest that living crocodilians …

Common evolutionary origin of acoustic communication in choanate vertebrates

G Jorgewich-Cohen, SW Townsend… - Nature …, 2022 - nature.com
Acoustic communication, broadly distributed along the vertebrate phylogeny, plays a
fundamental role in parental care, mate attraction and various other behaviours. Despite its …

The origins of acoustic communication in vertebrates

Z Chen, JJ Wiens - Nature communications, 2020 - nature.com
Acoustic communication is crucial to humans and many other tetrapods, including birds,
frogs, crocodilians, and mammals. However, large-scale patterns in its evolution are largely …