Fragmentation methods: A route to accurate calculations on large systems

MS Gordon, DG Fedorov, SR Pruitt… - Chemical …, 2012 - ACS Publications
Theoretical chemists have always strived to perform quantum mechanics (QM) calculations
on larger and larger molecules and molecular systems, as well as condensed phase …

Large-scale computations in chemistry: a bird's eye view of a vibrant field

AV Akimov, OV Prezhdo - Chemical reviews, 2015 - ACS Publications
1.1. The Meaning of “Large Scale” In general, the term “large scale” can have one of the
following five meanings in computational chemistry:(1) large size: power-law and …

Methods in electronic structure calculations

DR Bowler, T Miyazaki - Reports on Progress in Physics, 2012 - iopscience.iop.org
Linear-scaling methods, or methods, have computational and memory requirements which
scale linearly with the number of atoms in the system, N, in contrast to standard approaches …

Quantum chemical investigations on molecular clusters

SR Gadre, SD Yeole, N Sahu - Chemical reviews, 2014 - ACS Publications
A cluster is an aggregate of bound atoms or molecules, intermediate in size between a
molecule and a bulk solid. Clusters of a variety of molecules are receiving increasing …

Three pillars for achieving quantum mechanical molecular dynamics simulations of huge systems: Divide‐and‐conquer, density‐functional tight‐binding, and …

H Nishizawa, Y Nishimura, M Kobayashi… - Journal of …, 2016 - Wiley Online Library
The linear‐scaling divide‐and‐conquer (DC) quantum chemical methodology is applied to
the density‐functional tight‐binding (DFTB) theory to develop a massively parallel program …

Chromophore-specific theoretical spectroscopy: From subsystem density functional theory to mode-specific vibrational spectroscopy

J Neugebauer - Physics reports, 2010 - Elsevier
Spectroscopy forms the bridge between theory and experiment in the analysis of structure,
properties, and reactivity of functional molecules and molecular aggregates. Our knowledge …

Alternative linear-scaling methodology for the second-order Møller-Plesset perturbation calculation based on the divide-and-conquer method

M Kobayashi, Y Imamura, H Nakai - The Journal of chemical physics, 2007 - pubs.aip.org
A new scheme for obtaining the approximate correlation energy in the divide-and-conquer
(DC) method of Yang [Phys. Rev. Lett. 66, 1438 (1991)] is presented. In this method, the …

Divide and conquer Hartree− Fock calculations on proteins

X He, KM Merz Jr - Journal of chemical theory and computation, 2010 - ACS Publications
The ability to perform ab initio electronic structure calculations that scale linearly with the
system size is one of the central aims in theoretical chemistry. In this study, the …

Using quantum mechanical approaches to study biological systems

KM Merz Jr - Accounts of Chemical Research, 2014 - ACS Publications
Conspectus Quantum mechanics (QM) has revolutionized our understanding of the structure
and reactivity of small molecular systems. Given the tremendous impact of QM in this …

Subsystem density-functional theory as an effective tool for modeling ground and excited states, their dynamics and many-body interactions

A Krishtal, D Sinha, A Genova… - Journal of Physics …, 2015 - iopscience.iop.org
Subsystem density-functional theory (DFT) is an emerging technique for calculating the
electronic structure of complex molecular and condensed phase systems. In this topical …