Insights from genomes into the evolutionary importance and prevalence of hybridization in nature

SA Taylor, EL Larson - Nature ecology & evolution, 2019 - nature.com
Hybridization is an evolutionary phenomenon that has fascinated biologists for centuries.
Prior to the advent of whole-genome sequencing, it was clear that hybridization had played …

[HTML][HTML] The genomic consequences of hybridization

BM Moran, C Payne, Q Langdon, DL Powell… - Elife, 2021 - elifesciences.org
In the past decade, advances in genome sequencing have allowed researchers to uncover
the history of hybridization in diverse groups of species, including our own. Although the …

[HTML][HTML] Grey wolf genomic history reveals a dual ancestry of dogs

A Bergström, DWG Stanton, UH Taron, L Frantz… - Nature, 2022 - nature.com
The grey wolf (Canis lupus) was the first species to give rise to a domestic population, and
they remained widespread throughout the last Ice Age when many other large mammal …

Dsuite ‐ Fast D‐statistics and related admixture evidence from VCF files

M Malinsky, M Matschiner… - Molecular ecology …, 2021 - Wiley Online Library
Patterson's D, also known as the ABBA‐BABA statistic, and related statistics such as the f4‐
ratio, are commonly used to assess evidence of gene flow between populations or closely …

How many species of mammals are there?

CJ Burgin, JP Colella, PL Kahn… - Journal of …, 2018 - academic.oup.com
Accurate taxonomy is central to the study of biological diversity, as it provides the needed
evolutionary framework for taxon sampling and interpreting results. While the number of …

[HTML][HTML] Conservation of biodiversity in the genomics era

MA Supple, B Shapiro - Genome biology, 2018 - Springer
Abstract “Conservation genomics” encompasses the idea that genome-scale data will
improve the capacity of resource managers to protect species. Although genetic approaches …

Whole‐genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

AP Fuentes‐Pardo, DE Ruzzante - Molecular ecology, 2017 - Wiley Online Library
Whole‐genome resequencing (WGR) is a powerful method for addressing fundamental
evolutionary biology questions that have not been fully resolved using traditional methods …

Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction

JA Robinson, J Räikkönen, LM Vucetich… - Science …, 2019 - science.org
The observation that small isolated populations often suffer reduced fitness from inbreeding
depression has guided conservation theory and practice for decades. However …

[HTML][HTML] Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

JRS Meadows, JM Kidd, GD Wang, HG Parker… - Genome biology, 2023 - Springer
Abstract Background The international Dog10K project aims to sequence and analyze
several thousand canine genomes. Incorporating 20× data from 1987 individuals, including …

[HTML][HTML] Positive selection of ORF1ab, ORF3a, and ORF8 genes drives the early evolutionary trends of SARS-CoV-2 during the 2020 COVID-19 pandemic

L Velazquez-Salinas, S Zarate, S Eberl… - Frontiers in …, 2020 - frontiersin.org
In this study, we analyzed full-length SARS-CoV-2 genomes from multiple countries to
determine early trends in the evolutionary dynamics of the novel COVID-19 pandemic …