A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems

A Duval, SV Mathis, CK Joshi, V Schmidt… - arXiv preprint arXiv …, 2023 - arxiv.org
Recent advances in computational modelling of atomic systems, spanning molecules,
proteins, and materials, represent them as geometric graphs with atoms embedded as …

TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulations

RP Pelaez, G Simeon, R Galvelis… - Journal of Chemical …, 2024 - ACS Publications
Achieving a balance between computational speed, prediction accuracy, and universal
applicability in molecular simulations has been a persistent challenge. This paper presents …

Navigating energy landscapes for materials discovery: Integrating modeling, simulation, and machine learning

S Mannan, V Bihani, NMA Krishnan… - Materials Genome …, 2024 - Wiley Online Library
The energy landscape represents a high‐dimensional mapping of the configurational states
of an atomic system with their respective energies. Under isobaric conditions, enthalpy …

ConfRank: Improving GFN-FF Conformer Ranking with Pairwise Training

C Hölzer, R Oerder, S Grimme… - Journal of chemical …, 2024 - ACS Publications
Conformer ranking is a crucial task for drug discovery, with methods for generating
conformers often based on molecular (meta) dynamics or sophisticated sampling …

Deconstructing equivariant representations in molecular systems

KLK Lee, M Galkin, S Miret - arXiv preprint arXiv:2410.08131, 2024 - arxiv.org
Recent equivariant models have shown significant progress in not just chemical property
prediction, but as surrogates for dynamical simulations of molecules and materials. Many of …

Force field optimization by end-to-end differentiable atomistic simulation

AS Gangan, SS Schoenholz, ED Cubuk… - arXiv preprint arXiv …, 2024 - arxiv.org
The accuracy of atomistic simulations depends on the precision of force fields. Traditional
numerical methods often struggle to optimize the empirical force field parameters for …

Foundational Large Language Models for Materials Research

V Mishra, S Singh, D Ahlawat, M Zaki, V Bihani… - arXiv preprint arXiv …, 2024 - arxiv.org
Materials discovery and development are critical for addressing global challenges. Yet, the
exponential growth in materials science literature comprising vast amounts of textual data …

A Recipe for Charge Density Prediction

X Fu, A Rosen, K Bystrom, R Wang… - arXiv preprint arXiv …, 2024 - arxiv.org
In density functional theory, charge density is the core attribute of atomic systems from which
all chemical properties can be derived. Machine learning methods are promising in …

Slowly Quenched, High Pressure Glassy BO at DFT Accuracy

D Meher, NVS Avula, S Balasubramanian - arXiv preprint arXiv …, 2024 - arxiv.org
Modeling inorganic glasses requires an accurate representation of interatomic interactions,
large system sizes to allow for intermediate-range structural order, and slow quenching rates …

Explainable Artificial Intelligence for Graph Data

S Zhang - 2024 - escholarship.org
The development of artificial intelligence (AI) has significantly impacted our daily lives and
even driven new scientific discoveries. However, the modern AI models based on deep …