A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems
Recent advances in computational modelling of atomic systems, spanning molecules,
proteins, and materials, represent them as geometric graphs with atoms embedded as …
proteins, and materials, represent them as geometric graphs with atoms embedded as …
TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulations
Achieving a balance between computational speed, prediction accuracy, and universal
applicability in molecular simulations has been a persistent challenge. This paper presents …
applicability in molecular simulations has been a persistent challenge. This paper presents …
Navigating energy landscapes for materials discovery: Integrating modeling, simulation, and machine learning
The energy landscape represents a high‐dimensional mapping of the configurational states
of an atomic system with their respective energies. Under isobaric conditions, enthalpy …
of an atomic system with their respective energies. Under isobaric conditions, enthalpy …
ConfRank: Improving GFN-FF Conformer Ranking with Pairwise Training
C Hölzer, R Oerder, S Grimme… - Journal of chemical …, 2024 - ACS Publications
Conformer ranking is a crucial task for drug discovery, with methods for generating
conformers often based on molecular (meta) dynamics or sophisticated sampling …
conformers often based on molecular (meta) dynamics or sophisticated sampling …
Deconstructing equivariant representations in molecular systems
Recent equivariant models have shown significant progress in not just chemical property
prediction, but as surrogates for dynamical simulations of molecules and materials. Many of …
prediction, but as surrogates for dynamical simulations of molecules and materials. Many of …
Force field optimization by end-to-end differentiable atomistic simulation
AS Gangan, SS Schoenholz, ED Cubuk… - arXiv preprint arXiv …, 2024 - arxiv.org
The accuracy of atomistic simulations depends on the precision of force fields. Traditional
numerical methods often struggle to optimize the empirical force field parameters for …
numerical methods often struggle to optimize the empirical force field parameters for …
Foundational Large Language Models for Materials Research
Materials discovery and development are critical for addressing global challenges. Yet, the
exponential growth in materials science literature comprising vast amounts of textual data …
exponential growth in materials science literature comprising vast amounts of textual data …
A Recipe for Charge Density Prediction
In density functional theory, charge density is the core attribute of atomic systems from which
all chemical properties can be derived. Machine learning methods are promising in …
all chemical properties can be derived. Machine learning methods are promising in …
Slowly Quenched, High Pressure Glassy BO at DFT Accuracy
D Meher, NVS Avula, S Balasubramanian - arXiv preprint arXiv …, 2024 - arxiv.org
Modeling inorganic glasses requires an accurate representation of interatomic interactions,
large system sizes to allow for intermediate-range structural order, and slow quenching rates …
large system sizes to allow for intermediate-range structural order, and slow quenching rates …
Explainable Artificial Intelligence for Graph Data
S Zhang - 2024 - escholarship.org
The development of artificial intelligence (AI) has significantly impacted our daily lives and
even driven new scientific discoveries. However, the modern AI models based on deep …
even driven new scientific discoveries. However, the modern AI models based on deep …