Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Tea plant genomics: achievements, challenges and perspectives

EH Xia, W Tong, Q Wu, S Wei, J Zhao… - Horticulture …, 2020 - academic.oup.com
Tea is among the world's most widely consumed non-alcoholic beverages and possesses
enormous economic, health, and cultural values. It is produced from the cured leaves of tea …

Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …

[HTML][HTML] The water lily genome and the early evolution of flowering plants

L Zhang, F Chen, X Zhang, Z Li, Y Zhao, R Lohaus… - Nature, 2020 - nature.com
Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and
Austrobaileyales together form the so-called ANA-grade of angiosperms, which are extant …

A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering

MG Johnson, L Pokorny, S Dodsworth… - Systematic …, 2019 - academic.oup.com
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …

Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in …

Y Zhao, R Zhang, KW Jiang, J Qi, Y Hu, J Guo, R Zhu… - Molecular plant, 2021 - cell.com
Fabaceae are the third largest angiosperm family, with 765 genera and∼ 19 500 species.
They are important both economically and ecologically, and global Fabaceae crops are …

[PDF][PDF] Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole-genome …

C Zhang, T Zhang, F Luebert, Y Xiang… - Molecular biology …, 2020 - academic.oup.com
Asterids are one of the most successful angiosperm lineages, exhibiting extensive
morphological diversity and including a number of important crops. Despite their biological …

Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume

SA Cervantes-Pérez, S Thibivilliers, C Laffont… - Molecular Plant, 2022 - cell.com
Medicago truncatula is a model legume species that has been studied for decades to
understand the symbiotic relationship between legumes and soil bacteria collectively named …

Widespread whole genome duplications contribute to genome complexity and species diversity in angiosperms

R Ren, H Wang, C Guo, N Zhang, L Zeng, Y Chen… - Molecular plant, 2018 - cell.com
Gene duplications provide evolutionary potentials for generating novel functions, while
polyploidization or whole genome duplication (WGD) doubles the chromosomes initially and …

Comparative transcriptomic analysis unveils the deep phylogeny and secondary metabolite evolution of 116 Camellia plants

Q Wu, W Tong, H Zhao, R Ge, R Li, J Huang… - The Plant …, 2022 - Wiley Online Library
Camellia plants include more than 200 species of great diversity and immense economic,
ornamental, and cultural values. We sequenced the transcriptomes of 116 Camellia plants …