Evolution of 3D chromatin organization at different scales

RD Acemel, DG Lupiáñez - Current opinion in genetics & development, 2023 - Elsevier
Highlights•Chromatin folding into topologically associated domains (TADs) is pervasive
across animal groups.•TADs are plastic entities composed of genomic strata from different …

Genome and transcriptome mechanisms driving cephalopod evolution

CB Albertin, S Medina-Ruiz, T Mitros… - Nature …, 2022 - nature.com
Cephalopods are known for their large nervous systems, complex behaviors and
morphological innovations. To investigate the genomic underpinnings of these features, we …

Cephalopod-omics: emerging fields and technologies in cephalopod biology

T Baden, J Briseño, G Coffing… - Integrative and …, 2023 - academic.oup.com
Few animal groups can claim the level of wonder that cephalopods instill in the minds of
researchers and the general public. Much of cephalopod biology, however, remains …

MicroRNAs are deeply linked to the emergence of the complex octopus brain

G Zolotarov, B Fromm, I Legnini, S Ayoub, G Polese… - Science …, 2022 - science.org
Soft-bodied cephalopods such as octopuses are exceptionally intelligent invertebrates with
a highly complex nervous system that evolved independently from vertebrates. Because of …

Pan-evolutionary and regulatory genome architecture delineated by an integrated macro-and microsynteny approach

H Yu, Y Li, W Han, L Bao, F Liu, Y Ma, Z Pu, Q Zeng… - Nature …, 2024 - nature.com
The forthcoming massive genome data generated by the Earth BioGenome Project will open
up a new era of comparative genomics, for which genome synteny analysis provides an …

Lifecycle, culture, and maintenance of the emerging cephalopod models Euprymna berryi and Euprymna morsei

J Jolly, Y Hasegawa, C Sugimoto, L Zhang… - Frontiers in Marine …, 2022 - frontiersin.org
Cephalopod research remains limited by the inability to culture species under laboratory
conditions for multiple generations to provide continuous access to animals at all stages of …

Shifting landscapes: the role of 3D genomic organizations in gene regulatory strategies

J Hehmeyer, F Spitz, H Marlow - Current Opinion in Genetics & …, 2023 - Elsevier
3D genome folding enables the physical storage of chromosomes into the compact volume
of a cell's nucleus, allows for the accurate segregation of chromatin to daughter cells, and …

Gene modelling and annotation for the Hawaiian bobtail squid, Euprymna scolopes

TF Rogers, G Yalçın, J Briseno, N Vijayan, SV Nyholm… - Scientific Data, 2024 - nature.com
Coleoid cephalopods possess numerous complex, species-specific morphological and
behavioural adaptations, eg, a uniquely structured nervous system that is the largest among …

Evolution and function of chromatin domains across the tree of life

MF Szalay, B Majchrzycka, I Jerković… - Nature Structural & …, 2024 - nature.com
The genome of all organisms is spatially organized to function efficiently. The advent of
genome-wide chromatin conformation capture (Hi-C) methods has revolutionized our ability …

The gold-ringed octopus (Amphioctopus fangsiao) genome and cerebral single-nucleus transcriptomes provide insights into the evolution of karyotype and neural …

D Jiang, Q Liu, J Sun, S Liu, G Fan, L Wang, Y Zhang… - BMC biology, 2022 - Springer
Background Coleoid cephalopods have distinctive neural and morphological characteristics
compared to other invertebrates. Early studies reported massive genomic rearrangements …