[HTML][HTML] Microsatellite markers: what they mean and why they are so useful

MLC Vieira, L Santini, AL Diniz… - Genetics and molecular …, 2016 - SciELO Brasil
Abstract Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in
plant genetics studies, using both low and high throughput genotyping approaches …

Advances in research on the carrot, an important root vegetable in the Apiaceae family

F Que, XL Hou, GL Wang, ZS Xu, GF Tan… - Horticulture …, 2019 - academic.oup.com
Abstract Carrots (Daucus carota L.), among the most important root vegetables in the
Apiaceae family, are cultivated worldwide. The storage root is widely utilized due to its …

A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution

M Iorizzo, S Ellison, D Senalik, P Zeng, P Satapoomin… - Nature …, 2016 - nature.com
We report a high-quality chromosome-scale assembly and analysis of the carrot (Daucus
carota) genome, the first sequenced genome to include a comparative evolutionary analysis …

Using next‐generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

JE Zalapa, H Cuevas, H Zhu, S Steffan… - American journal of …, 2012 - Wiley Online Library
The application of next‐generation sequencing (NGS) technologies for the development of
simple sequence repeat (SSR) or microsatellite loci for genetic research in the botanical …

Mining and development of novel SSR markers using next generation sequencing (NGS) data in plants

S Taheri, T Lee Abdullah, MR Yusop, MM Hanafi… - Molecules, 2018 - mdpi.com
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and
multi-purpose genetic markers exploited in plant functional genomics. However, the …

Origin, evolution, breeding, and omics of Apiaceae: a family of vegetables and medicinal plants

XJ Wang, Q Luo, T Li, PH Meng, YT Pu… - Horticulture …, 2022 - academic.oup.com
Many of the world's most important vegetables and medicinal crops, including carrot, celery,
coriander, fennel, and cumin, belong to the Apiaceae family. In this review, we summarize …

MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping

WP Lee, MP Stromberg, A Ward, C Stewart… - PloS one, 2014 - journals.plos.org
MOSAIK is a stable, sensitive and open-source program for mapping second and third-
generation sequencing reads to a reference genome. Uniquely among current mapping …

Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots

K Coe, H Bostan, W Rolling, S Turner-Hissong… - Nature Plants, 2023 - nature.com
Here an improved carrot reference genome and resequencing of 630 carrot accessions
were used to investigate carrot domestication and improvement. The study demonstrated …

Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae)

M Iorizzo, DA Senalik, SL Ellison… - American Journal of …, 2013 - Wiley Online Library
• Premise of the study: Analyses of genetic structure and phylogenetic relationships
illuminate the origin and domestication of modern crops. Despite being an important …

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis …

D Li, Z Deng, B Qin, X Liu, Z Men - BMC genomics, 2012 - Springer
Background In rubber tree, bark is one of important agricultural and biological organs.
However, the molecular mechanism involved in the bark formation and development in …