Community detection algorithms in healthcare applications: a systematic review

M Rostami, M Oussalah, K Berahmand… - IEEE Access, 2023 - ieeexplore.ieee.org
Over the past few years, the number and volume of data sources in healthcare databases
has grown exponentially. Analyzing these voluminous medical data is both opportunity and …

Multi-modality artificial intelligence in digital pathology

Y Qiao, L Zhao, C Luo, Y Luo, Y Wu, S Li… - Briefings in …, 2022 - academic.oup.com
In common medical procedures, the time-consuming and expensive nature of obtaining test
results plagues doctors and patients. Digital pathology research allows using computational …

[HTML][HTML] Learning to predict RNA sequence expressions from whole slide images with applications for search and classification

A Alsaafin, A Safarpoor, M Sikaroudi, JD Hipp… - Communications …, 2023 - nature.com
Deep learning methods are widely applied in digital pathology to address clinical
challenges such as prognosis and diagnosis. As one of the most recent applications, deep …

[HTML][HTML] hist2RNA: An Efficient Deep Learning Architecture to Predict Gene Expression from Breast Cancer Histopathology Images

RK Mondol, EKA Millar, PH Graham, L Browne… - Cancers, 2023 - mdpi.com
Simple Summary Breast cancer diagnosis and treatment can be improved by understanding
the specific genetic makeup of a patient's tumour. Currently, this genetic information is …

[HTML][HTML] Contrastive multiple instance learning: An unsupervised framework for learning slide-level representations of whole slide histopathology images without …

TE Tavolara, MN Gurcan, MKK Niazi - Cancers, 2022 - mdpi.com
Simple Summary Recent AI methods in the automated analysis of histopathological imaging
data associated with cancer have trended towards less supervision by humans. Yet, there …

[HTML][HTML] CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice

D Koyuncu, MKK Niazi, T Tavolara, C Abeijon… - PLoS …, 2021 - journals.plos.org
More humans have died of tuberculosis (TB) than any other infectious disease and millions
still die each year. Experts advocate for blood-based, serum protein biomarkers to help …

[HTML][HTML] Deep learning-based prediction of molecular tumor biomarkers from H&E: a practical review

HD Couture - Journal of Personalized Medicine, 2022 - mdpi.com
Molecular and genomic properties are critical in selecting cancer treatments to target
individual tumors, particularly for immunotherapy. However, the methods to assess such …

[HTML][HTML] BCR-Net: A deep learning framework to predict breast cancer recurrence from histopathology images

Z Su, MKK Niazi, TE Tavolara, S Niu, GH Tozbikian… - Plos one, 2023 - journals.plos.org
Breast cancer is the most common malignancy in women, with over 40,000 deaths annually
in the United States alone. Clinicians often rely on the breast cancer recurrence score …

[HTML][HTML] Systems genetics uncover new loci containing functional gene candidates in Mycobacterium tuberculosis-infected Diversity Outbred mice

DM Gatti, AL Tyler, JM Mahoney, GA Churchill… - PLoS …, 2024 - journals.plos.org
Mycobacterium tuberculosis infects two billion people across the globe, and results in 8–9
million new tuberculosis (TB) cases and 1–1.5 million deaths each year. Most patients have …

[HTML][HTML] DeeP4med: deep learning for P4 medicine to predict normal and cancer transcriptome in multiple human tissues

R Mahdi-Esferizi, B Haji Molla Hoseyni… - BMC …, 2023 - Springer
Background P4 medicine (predict, prevent, personalize, and participate) is a new approach
to diagnosing and predicting diseases on a patient-by-patient basis. For the prevention and …