Evolution of 3D chromatin organization at different scales

RD Acemel, DG Lupiáñez - Current opinion in genetics & development, 2023 - Elsevier
Highlights•Chromatin folding into topologically associated domains (TADs) is pervasive
across animal groups.•TADs are plastic entities composed of genomic strata from different …

Functional genomics in Spiralia

FM Martín-Zamora, BE Davies… - Briefings in …, 2023 - academic.oup.com
Our understanding of the mechanisms that modulate gene expression in animals is strongly
biased by studying a handful of model species that mainly belong to three groups: Insecta …

Evolutionary history and divergence times of Odonata (dragonflies and damselflies) revealed through transcriptomics

M Kohli, H Letsch, C Greve, O Béthoux… - Iscience, 2021 - cell.com
Dragonflies and damselflies are among the earliest flying insects with extant
representatives. However, unraveling details of their long evolutionary history, such as egg …

Multifunctional cellulase enzymes are ancestral in Polyneoptera

M Shelomi, B Wipfler, X Zhou… - Insect Molecular …, 2020 - Wiley Online Library
Many hemimetabolous insects produce their own cellulase enzymes from the glycoside
hydrolase family 9, first observed in termites and cockroaches. Phasmatodea have multiple …

Four myriapod relatives–but who are sisters? No end to debates on relationships among the four major myriapod subgroups

NU Szucsich, D Bartel, A Blanke, A Böhm… - BMC evolutionary …, 2020 - Springer
Background Phylogenetic relationships among the myriapod subgroups Chilopoda,
Diplopoda, Symphyla and Pauropoda are still not robustly resolved. The first phylogenomic …

Evolutionary history of major chemosensory gene families across Panarthropoda

J Vizueta, P Escuer, C Frías-López… - Molecular Biology …, 2020 - academic.oup.com
Chemosensory perception is a fundamental biological process of particular relevance in
basic and applied arthropod research. However, apart from insects, there is little knowledge …

Promoter-proximal chromatin domain insulator protein BEAF mediates local and long-range communication with a transcription factor and directly activates a …

Y Dong, SVSP Avva, M Maharjan, J Jacobi, CM Hart - Genetics, 2020 - academic.oup.com
Abstract BEAF (Boundary Element-Associated Factor) was originally identified as a
Drosophila melanoga st er chromatin domain insulator-binding protein, suggesting a role in …

Role of Su(Hw) zinc finger 10 and interaction with CP190 and Mod(mdg4) proteins in recruiting the Su(Hw) complex to chromatin sites in Drosophila

L Melnikova, M Kostyuchenko, A Parshikov… - PLoS …, 2018 - journals.plos.org
Su (Hw) belongs to the class of proteins that organize chromosome architecture and
boundaries/insulators between regulatory domains. This protein contains a cluster of 12 zinc …

The Tramtrack group BTB protein domains are Arthropoda-specific multimerization modules

AN Bonchuk, KI Balagurov, KM Boyko, NN Sluchanko… - bioRxiv, 2022 - biorxiv.org
Abstract BTB (Bric-a-brack, Tramtrack and Broad Complex) is a diverse group of protein-
protein interaction domains found within various eukaryotic proteins. In metazoans, many …

Genomic data reveal high conservation but divergent evolutionary pattern of Polycomb/Trithorax group genes in arthropods

F Jiang, Q Liu, X Liu, XH Wang, L Kang - Insect science, 2019 - Wiley Online Library
Epigenetic gene control is maintained by chromatin‐associated Polycomb group (PcG) and
Trithorax group (TrxG) genes, which act antagonistically via the interplay between PcG and …