Evolution of 3D chromatin organization at different scales
RD Acemel, DG Lupiáñez - Current opinion in genetics & development, 2023 - Elsevier
Highlights•Chromatin folding into topologically associated domains (TADs) is pervasive
across animal groups.•TADs are plastic entities composed of genomic strata from different …
across animal groups.•TADs are plastic entities composed of genomic strata from different …
Functional genomics in Spiralia
FM Martín-Zamora, BE Davies… - Briefings in …, 2023 - academic.oup.com
Our understanding of the mechanisms that modulate gene expression in animals is strongly
biased by studying a handful of model species that mainly belong to three groups: Insecta …
biased by studying a handful of model species that mainly belong to three groups: Insecta …
Evolutionary history and divergence times of Odonata (dragonflies and damselflies) revealed through transcriptomics
Dragonflies and damselflies are among the earliest flying insects with extant
representatives. However, unraveling details of their long evolutionary history, such as egg …
representatives. However, unraveling details of their long evolutionary history, such as egg …
Multifunctional cellulase enzymes are ancestral in Polyneoptera
Many hemimetabolous insects produce their own cellulase enzymes from the glycoside
hydrolase family 9, first observed in termites and cockroaches. Phasmatodea have multiple …
hydrolase family 9, first observed in termites and cockroaches. Phasmatodea have multiple …
Four myriapod relatives–but who are sisters? No end to debates on relationships among the four major myriapod subgroups
NU Szucsich, D Bartel, A Blanke, A Böhm… - BMC evolutionary …, 2020 - Springer
Background Phylogenetic relationships among the myriapod subgroups Chilopoda,
Diplopoda, Symphyla and Pauropoda are still not robustly resolved. The first phylogenomic …
Diplopoda, Symphyla and Pauropoda are still not robustly resolved. The first phylogenomic …
Evolutionary history of major chemosensory gene families across Panarthropoda
Chemosensory perception is a fundamental biological process of particular relevance in
basic and applied arthropod research. However, apart from insects, there is little knowledge …
basic and applied arthropod research. However, apart from insects, there is little knowledge …
Promoter-proximal chromatin domain insulator protein BEAF mediates local and long-range communication with a transcription factor and directly activates a …
Y Dong, SVSP Avva, M Maharjan, J Jacobi, CM Hart - Genetics, 2020 - academic.oup.com
Abstract BEAF (Boundary Element-Associated Factor) was originally identified as a
Drosophila melanoga st er chromatin domain insulator-binding protein, suggesting a role in …
Drosophila melanoga st er chromatin domain insulator-binding protein, suggesting a role in …
Role of Su(Hw) zinc finger 10 and interaction with CP190 and Mod(mdg4) proteins in recruiting the Su(Hw) complex to chromatin sites in Drosophila
L Melnikova, M Kostyuchenko, A Parshikov… - PLoS …, 2018 - journals.plos.org
Su (Hw) belongs to the class of proteins that organize chromosome architecture and
boundaries/insulators between regulatory domains. This protein contains a cluster of 12 zinc …
boundaries/insulators between regulatory domains. This protein contains a cluster of 12 zinc …
The Tramtrack group BTB protein domains are Arthropoda-specific multimerization modules
AN Bonchuk, KI Balagurov, KM Boyko, NN Sluchanko… - bioRxiv, 2022 - biorxiv.org
Abstract BTB (Bric-a-brack, Tramtrack and Broad Complex) is a diverse group of protein-
protein interaction domains found within various eukaryotic proteins. In metazoans, many …
protein interaction domains found within various eukaryotic proteins. In metazoans, many …
Genomic data reveal high conservation but divergent evolutionary pattern of Polycomb/Trithorax group genes in arthropods
F Jiang, Q Liu, X Liu, XH Wang, L Kang - Insect science, 2019 - Wiley Online Library
Epigenetic gene control is maintained by chromatin‐associated Polycomb group (PcG) and
Trithorax group (TrxG) genes, which act antagonistically via the interplay between PcG and …
Trithorax group (TrxG) genes, which act antagonistically via the interplay between PcG and …