Genomic selection in dairy cattle: the USDA experience

GR Wiggans, JB Cole, SM Hubbard… - Annual review of …, 2017 - annualreviews.org
Genomic selection has revolutionized dairy cattle breeding. Since 2000, assays have been
developed to genotype large numbers of single-nucleotide polymorphisms (SNPs) at …

The future of parentage analysis: From microsatellites to SNPs and beyond

SP Flanagan, AG Jones - Molecular ecology, 2019 - Wiley Online Library
Parentage analysis is a cornerstone of molecular ecology that has delivered fundamental
insights into behaviour, ecology and evolution. Microsatellite markers have long been the …

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary US Holstein cows

JB Cole, GR Wiggans, L Ma, TS Sonstegard, TJ Lawlor… - BMC genomics, 2011 - Springer
Background Genome-wide association analysis is a powerful tool for annotating phenotypic
effects on the genome and knowledge of genes and chromosomal regions associated with …

Inbreeding and runs of homozygosity before and after genomic selection in North American Holstein cattle

M Forutan, S Ansari Mahyari, C Baes, N Melzer… - BMC genomics, 2018 - Springer
Background While autozygosity as a consequence of selection is well understood, there is
limited information on the ability of different methods to measure true inbreeding. In the …

[HTML][HTML] Effect of genomic selection on rate of inbreeding and coancestry and effective population size of Holstein and Jersey cattle populations

BO Makanjuola, F Miglior, EA Abdalla, C Maltecca… - Journal of dairy …, 2020 - Elsevier
Genetic diversity in livestock populations is a significant contributor to the sustainability of
animal production. Also, genetic diversity allows animal production to become more …

[HTML][HTML] Genetic parameters for predicted methane production and potential for reducing enteric emissions through genomic selection

Y De Haas, JJ Windig, MPL Calus, J Dijkstra… - Journal of dairy …, 2011 - Elsevier
Mitigation of enteric methane (CH4) emission in ruminants has become an important area of
research because accumulation of CH4 is linked to global warming. Nutritional and …

[HTML][HTML] The genomic evaluation system in the United States: Past, present, future

GR Wiggans, PM VanRaden, TA Cooper - Journal of dairy science, 2011 - Elsevier
Implementation of genomic evaluation has caused profound changes in dairy cattle
breeding. All young bulls bought by major artificial insemination organizations now are …

Genomic evaluations with many more genotypes

PM VanRaden, JR O'Connell, GR Wiggans… - Genetics Selection …, 2011 - Springer
Abstract Background Genomic evaluations in Holstein dairy cattle have quickly become
more reliable over the last two years in many countries as more animals have been …

[PDF][PDF] PREGSF90–POSTGSF90: computational tools for the implementation of single-step genomic selection and genome-wide association with ungenotyped …

I Aguilar, I Misztal, S Tsuruta, A Legarra… - Proceedings of the 10th …, 2014 - researchgate.net
Single step genomic methodology provides a unified framework to integrate phenotypic,
pedigree and genomic information in prediction of breeding values for all individuals and in …

Genomic characteristics of cattle copy number variations

Y Hou, GE Liu, DM Bickhart, MF Cardone, K Wang… - BMC genomics, 2011 - Springer
Background Copy number variation (CNV) represents another important source of genetic
variation complementary to single nucleotide polymorphism (SNP). High-density SNP array …