Computational aspects underlying genome to phenome analysis in plants

AM Bolger, H Poorter, K Dumschott… - The Plant …, 2019 - Wiley Online Library
Recent advances in genomics technologies have greatly accelerated the progress in both
fundamental plant science and applied breeding research. Concurrently, high‐throughput …

Using molecular simulation to explore the nanoscale dynamics of the plant kinome

AS Moffett, D Shukla - Biochemical Journal, 2018 - portlandpress.com
Eukaryotic protein kinases (PKs) are a large family of proteins critical for cellular response to
external signals, acting as molecular switches. PKs propagate biochemical signals by …

Broadening the impact of plant science through innovative, integrative, and inclusive outreach

J Friesner, A Colón‐Carmona, AM Schnoes… - Plant …, 2021 - Wiley Online Library
Population growth and climate change will impact food security and potentially exacerbate
the environmental toll that agriculture has taken on our planet. These existential concerns …

Directions for research and training in plant omics: Big Questions and Big Data

CT Argueso, SM Assmann, KD Birnbaum, S Chen… - Plant …, 2019 - Wiley Online Library
A key remit of the NSF‐funded “Arabidopsis Research and Training for the 21st
Century”(ART‐21) Research Coordination Network has been to convene a series of …

Building a local community of practice in scientific programming for life scientists

SLR Stevens, M Kuzak, C Martinez, A Moser… - PLoS …, 2018 - journals.plos.org
In this paper, we describe why and how to build a local community of practice in scientific
programming for life scientists who use computers and programming in their research. A …

Challenges and opportunities to build quantitative self-confidence in biologists

K Cuddington, KC Abbott, FR Adler, M Aydeniz… - …, 2023 - academic.oup.com
New graduate students in biology programs may lack the quantitative skills necessary for
their research and professional careers. The acquisition of these skills may be impeded by …

Inferring biosynthetic and gene regulatory networks from Artemisia annua RNA sequencing data on a credit card-sized ARM computer

QW Tan, M Mutwil - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2020 - Elsevier
Prediction of gene function and gene regulatory networks is one of the most active topics in
bioinformatics. The accumulation of publicly available gene expression data for hundreds of …

LSTrAP-cloud: a user-friendly cloud computing pipeline to infer coexpression networks

QW Tan, W Goh, M Mutwil - Genes, 2020 - mdpi.com
As genomes become more and more available, gene function prediction presents itself as
one of the major hurdles in our quest to extract meaningful information on the biological …

Reinventing postgraduate training in the plant sciences: T‐training defined through modularity, customization, and distributed mentorship

NA Henkhaus, CB Taylor, VR Greenlee… - Plant …, 2018 - Wiley Online Library
Abstract The Plant Science Research Network (PSRN) comprises scientific societies and
organizations with a mission to build and communicate a consensus vision of the future of …

[HTML][HTML] circRNAs 对结直肠癌的抑制作用及其生物信息学分析

李霞, 于逸, 左海维, 周凤娟, 辛勇 - 吉林大学学报(医学版), 2021 - xuebao.jlu.edu.cn
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