Fast online deconvolution of calcium imaging data
Fluorescent calcium indicators are a popular means for observing the spiking activity of
large neuronal populations, but extracting the activity of each neuron from raw fluorescence …
large neuronal populations, but extracting the activity of each neuron from raw fluorescence …
Thalamic nuclei convey diverse contextual information to layer 1 of visual cortex
Sensory perception depends on the context in which a stimulus occurs. Prevailing models
emphasize cortical feedback as the source of contextual modulation. However, higher order …
emphasize cortical feedback as the source of contextual modulation. However, higher order …
Locomotion-dependent remapping of distributed cortical networks
The interactions between neocortical areas are fluid and state-dependent, but how
individual neurons couple to cortex-wide network dynamics remains poorly understood. We …
individual neurons couple to cortex-wide network dynamics remains poorly understood. We …
Visual intracortical and transthalamic pathways carry distinct information to cortical areas
Sensory processing involves information flow between neocortical areas, assumed to rely
on direct intracortical projections. However, cortical areas may also communicate indirectly …
on direct intracortical projections. However, cortical areas may also communicate indirectly …
Fast nonconvex deconvolution of calcium imaging data
Calcium imaging data promises to transform the field of neuroscience by making it possible
to record from large populations of neurons simultaneously. However, determining the exact …
to record from large populations of neurons simultaneously. However, determining the exact …
Inferring spikes from calcium imaging in dopamine neurons
Calcium imaging has led to discoveries about neural correlates of behavior in subcortical
neurons, including dopamine (DA) neurons. However, spike inference methods have not …
neurons, including dopamine (DA) neurons. However, spike inference methods have not …
[PDF][PDF] Local and global spatial organization of interaural level difference and frequency preferences in auditory cortex
M Panniello, AJ King, JC Dahmen… - Cerebral …, 2018 - academic.oup.com
Despite decades of microelectrode recordings, fundamental questions remain about how
auditory cortex represents sound-source location. Here, we used in vivo 2-photon calcium …
auditory cortex represents sound-source location. Here, we used in vivo 2-photon calcium …
FocusStack and StimServer: a new open source MATLAB toolchain for visual stimulation and analysis of two-photon calcium neuronal imaging data
Two-photon calcium imaging of neuronal responses is an increasingly accessible
technology for probing population responses in cortex at single cell resolution, and with …
technology for probing population responses in cortex at single cell resolution, and with …
Reconstruction of burst activity from calcium imaging of neuronal population via Lq minimization and interval screening
T Quan, X Lv, X Liu, S Zeng - Biomedical optics express, 2016 - opg.optica.org
Calcium imaging is becoming an increasingly popular technology to indirectly measure
activity patterns in local neuronal networks. Based on the dependence of calcium …
activity patterns in local neuronal networks. Based on the dependence of calcium …
Information-theoretic approach and fundamental limits of resolving two closely timed neuronal spikes in mouse brain calcium imaging
S Soltanian-Zadeh, Y Gong… - IEEE Transactions on …, 2018 - ieeexplore.ieee.org
Objective: Although optical imaging of neurons using fluorescent genetically encoded
calcium sensors has enabled large-scale in vivo experiments, the sensors' slow dynamics …
calcium sensors has enabled large-scale in vivo experiments, the sensors' slow dynamics …