Machine learning methods for small data challenges in molecular science
B Dou, Z Zhu, E Merkurjev, L Ke, L Chen… - Chemical …, 2023 - ACS Publications
Small data are often used in scientific and engineering research due to the presence of
various constraints, such as time, cost, ethics, privacy, security, and technical limitations in …
various constraints, such as time, cost, ethics, privacy, security, and technical limitations in …
A comprehensive survey on deep graph representation learning
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …
structured data into low-dimensional dense vectors, which is a fundamental task that has …
Deep learning methods for molecular representation and property prediction
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …
predict molecular property through diversified models.•One, two, and three-dimensional …
Enhancing activity prediction models in drug discovery with the ability to understand human language
Activity and property prediction models are the central workhorses in drug discovery and
materials sciences, but currently, they have to be trained or fine-tuned for new tasks. Without …
materials sciences, but currently, they have to be trained or fine-tuned for new tasks. Without …
Few-shot molecular property prediction via hierarchically structured learning on relation graphs
This paper studies few-shot molecular property prediction, which is a fundamental problem
in cheminformatics and drug discovery. More recently, graph neural network based model …
in cheminformatics and drug discovery. More recently, graph neural network based model …
Learning subpocket prototypes for generalizable structure-based drug design
Generating molecules with high binding affinities to target proteins (aka structure-based
drug design) is a fundamental and challenging task in drug discovery. Recently, deep …
drug design) is a fundamental and challenging task in drug discovery. Recently, deep …
Graph-based molecular representation learning
Molecular representation learning (MRL) is a key step to build the connection between
machine learning and chemical science. In particular, it encodes molecules as numerical …
machine learning and chemical science. In particular, it encodes molecules as numerical …
Context-enriched molecule representations improve few-shot drug discovery
A central task in computational drug discovery is to construct models from known active
molecules to find further promising molecules for subsequent screening. However, typically …
molecules to find further promising molecules for subsequent screening. However, typically …
Few-shot learning on graphs
Graph representation learning has attracted tremendous attention due to its remarkable
performance in many real-world applications. However, prevailing supervised graph …
performance in many real-world applications. However, prevailing supervised graph …
Meta-learning adaptive deep kernel gaussian processes for molecular property prediction
We propose Adaptive Deep Kernel Fitting with Implicit Function Theorem (ADKF-IFT), a
novel framework for learning deep kernel Gaussian processes (GPs) by interpolating …
novel framework for learning deep kernel Gaussian processes (GPs) by interpolating …