Computational modeling of realistic cell membranes
Cell membranes contain a large variety of lipid types and are crowded with proteins,
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
Multifaceted computational modeling in glycoscience
S Perez, O Makshakova - Chemical Reviews, 2022 - ACS Publications
Glycoscience assembles all the scientific disciplines involved in studying various molecules
and macromolecules containing carbohydrates and complex glycans. Such an ensemble …
and macromolecules containing carbohydrates and complex glycans. Such an ensemble …
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
TA Wassenaar, HI Ingólfsson… - Journal of chemical …, 2015 - ACS Publications
For simulations of membranes and membrane proteins, the generation of the lipid bilayer is
a critical step in the setup of the system. Membranes comprising multiple components pose …
a critical step in the setup of the system. Membranes comprising multiple components pose …
Crosstalk and trade‐offs: plant responses to climate change‐associated abiotic and biotic stresses
As sessile organisms, plants are constantly challenged by a dynamic growing environment.
This includes fluctuations in temperature, water availability, light levels, and changes in …
This includes fluctuations in temperature, water availability, light levels, and changes in …
[HTML][HTML] Photosynthetic, respiratory and extracellular electron transport pathways in cyanobacteria
Cyanobacteria have evolved elaborate electron transport pathways to carry out
photosynthesis and respiration, and to dissipate excess energy in order to limit cellular …
photosynthesis and respiration, and to dissipate excess energy in order to limit cellular …
[HTML][HTML] Protein post-translational modifications: In silico prediction tools and molecular modeling
M Audagnotto, M Dal Peraro - Computational and structural biotechnology …, 2017 - Elsevier
Post-translational modifications (PTMs) occur in almost all proteins and play an important
role in numerous biological processes by significantly affecting proteins' structure and …
role in numerous biological processes by significantly affecting proteins' structure and …
Comparative molecular dynamics simulation studies of realistic eukaryotic, prokaryotic, and archaeal membranes
ID Pogozheva, GA Armstrong, L Kong… - Journal of chemical …, 2022 - ACS Publications
We present a comparative all-atom molecular dynamics simulation study of 18
biomembrane systems with lipid compositions corresponding to eukaryotic, bacterial, and …
biomembrane systems with lipid compositions corresponding to eukaryotic, bacterial, and …
[HTML][HTML] Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale
Highlights•Simulations provide a computational tool to probe membrane structure and
dynamics.•Simulations can successfully predict lipid binding sites on membrane …
dynamics.•Simulations can successfully predict lipid binding sites on membrane …
Computational 'microscopy'of cellular membranes
HI Ingólfsson, C Arnarez, X Periole… - Journal of cell …, 2016 - journals.biologists.com
Computational 'microscopy'refers to the use of computational resources to simulate the
dynamics of a molecular system. Tuned to cell membranes, this computational …
dynamics of a molecular system. Tuned to cell membranes, this computational …
Atomistic simulations of membrane ion channel conduction, gating, and modulation
Membrane ion channels are the fundamental electrical components in the nervous system.
Recent developments in X-ray crystallography and cryo-EM microscopy have revealed what …
Recent developments in X-ray crystallography and cryo-EM microscopy have revealed what …