Understanding the effectiveness of natural compound mixtures in cancer through their molecular mode of action
Many approaches to cancer management are often ineffective due to adverse reactions,
drug resistance, or inadequate target specificity of single anti-cancer agents. In contrast, a …
drug resistance, or inadequate target specificity of single anti-cancer agents. In contrast, a …
Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
G Lightbody, V Haberland, F Browne… - Briefings in …, 2019 - academic.oup.com
There has been an exponential growth in the performance and output of sequencing
technologies (omics data) with full genome sequencing now producing gigabases of reads …
technologies (omics data) with full genome sequencing now producing gigabases of reads …
A comparison of RNA-Seq results from paired formalin-fixed paraffin-embedded and fresh-frozen glioblastoma tissue samples
A Esteve-Codina, O Arpi, M Martinez-García, E Pineda… - PloS one, 2017 - journals.plos.org
The molecular classification of glioblastoma (GBM) based on gene expression might better
explain outcome and response to treatment than clinical factors. Whole transcriptome …
explain outcome and response to treatment than clinical factors. Whole transcriptome …
[HTML][HTML] Exome-capture RNA sequencing of decade-old breast cancers and matched decalcified bone metastases
Bone metastases (BoM) are a significant cause of morbidity in patients with estrogen
receptor–positive (ER-positive) breast cancer; yet, characterizations of human specimens …
receptor–positive (ER-positive) breast cancer; yet, characterizations of human specimens …
Reliability of whole-exome sequencing for assessing intratumor genetic heterogeneity
Multi-region sequencing is used to detect intratumor genetic heterogeneity (ITGH) in tumors.
To assess whether genuine ITGH can be distinguished from sequencing artifacts, we …
To assess whether genuine ITGH can be distinguished from sequencing artifacts, we …
Comparison of whole transcriptome sequencing of fresh, frozen, and formalin-fixed, paraffin-embedded cardiac tissue
SB Jacobsen, J Tfelt-Hansen, MH Smerup… - PLoS …, 2023 - journals.plos.org
The use of fresh tissue for molecular studies is preferred but often impossible. Instead,
frozen or formalin-fixed, paraffin-embedded (FFPE) tissues are widely used and constitute …
frozen or formalin-fixed, paraffin-embedded (FFPE) tissues are widely used and constitute …
Wholistic approach: transcriptomic analysis and beyond using archival material for molecular diagnosis
N Macagno, D Pissaloux… - Genes …, 2022 - Wiley Online Library
Many neoplasms remain unclassified after histopathological examination, which requires
further molecular analysis. To this regard, mesenchymal neoplasms are particularly …
further molecular analysis. To this regard, mesenchymal neoplasms are particularly …
The utilization of formalin fixed‐paraffin‐embedded specimens in high throughput genomic studies
High throughput genomic assays empower us to study the entire human genome in short
time with reasonable cost. Formalin fixed‐paraffin‐embedded (FFPE) tissue processing …
time with reasonable cost. Formalin fixed‐paraffin‐embedded (FFPE) tissue processing …
RNA-seq from archival FFPE breast cancer samples: molecular pathway fidelity and novel discovery
Background Formalin-fixed, paraffin-embedded (FFPE) tissues for RNA-seq have
advantages over fresh frozen tissue including abundance and availability, connection to rich …
advantages over fresh frozen tissue including abundance and availability, connection to rich …
Understanding preanalytical variables and their effects on clinical biomarkers of oncology and immunotherapy
L Agrawal, KB Engel, SR Greytak, HM Moore - Seminars in cancer biology, 2018 - Elsevier
Identifying a suitable course of immunotherapy treatment for a given patient as well as
monitoring treatment response is heavily reliant on biomarkers detected and quantified in …
monitoring treatment response is heavily reliant on biomarkers detected and quantified in …