Boolean modeling in systems biology: an overview of methodology and applications
Mathematical modeling of biological processes provides deep insights into complex cellular
systems. While quantitative and continuous models such as differential equations have been …
systems. While quantitative and continuous models such as differential equations have been …
Algebraic approach to dynamics of multivalued networks
Z Li, D Cheng - International Journal of Bifurcation and Chaos, 2010 - World Scientific
Using semi-tensor product of matrices, a matrix expression for multivalued logic is proposed,
where a logical variable is expressed as a vector, and a logical function is expressed as a …
where a logical variable is expressed as a vector, and a logical function is expressed as a …
A linear representation of dynamics of Boolean networks
A new matrix product, called semi-tensor product of matrices, is reviewed. Using it, a matrix
expression of logic is proposed, where a logical variable is expressed as a vector, a logical …
expression of logic is proposed, where a logical variable is expressed as a vector, a logical …
On pinning controllability of Boolean control networks
This technical note presents analytical investigations of reachability and controllability of
Boolean control networks (BCNs) with pinning controllers. Based on semi-tensor product …
Boolean control networks (BCNs) with pinning controllers. Based on semi-tensor product …
On controllability of delayed Boolean control networks
This paper is devoted to studying the trajectory and state controllability of Boolean control
networks (BCNs) with time delay. In contrast to BCNs without time delay, the dynamics of …
networks (BCNs) with time delay. In contrast to BCNs without time delay, the dynamics of …
Disturbance decoupling of Boolean control networks
D Cheng - IEEE Transactions on Automatic Control, 2010 - ieeexplore.ieee.org
Disturbance decoupling problem (DDP) of Boolean control networks is considered. Using
semi-tensor product of matrices and the matrix expression of logical functions, a working …
semi-tensor product of matrices and the matrix expression of logical functions, a working …
Optimal control of logical control networks
Y Zhao, Z Li, D Cheng - IEEE Transactions on Automatic …, 2010 - ieeexplore.ieee.org
This paper considers the infinite horizon optimal control of logical control networks, including
Boolean control networks as a special case. Using the framework of game theory, the …
Boolean control networks as a special case. Using the framework of game theory, the …
Boolean modeling of biological regulatory networks: a methodology tutorial
A Saadatpour, R Albert - Methods, 2013 - Elsevier
Given the complexity and interactive nature of biological systems, constructing informative
and coherent network models of these systems and subsequently developing efficient …
and coherent network models of these systems and subsequently developing efficient …
Attractor analysis of asynchronous Boolean models of signal transduction networks
Prior work on the dynamics of Boolean networks, including analysis of the state space
attractors and the basin of attraction of each attractor, has mainly focused on synchronous …
attractors and the basin of attraction of each attractor, has mainly focused on synchronous …
Controllability of Boolean control networks with time delays in states
F Li, J Sun - Automatica, 2011 - Elsevier
This paper investigates the controllability of Boolean networks with time-invariant delays in
states. After a brief introduction on converting the logic dynamics to discrete time delay …
states. After a brief introduction on converting the logic dynamics to discrete time delay …