Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

N Fernandez-Pozo, N Menda, JD Edwards… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Sol Genomics Network (SGN, http://solgenomics. net) is a web portal with
genomic and phenotypic data, and analysis tools for the Solanaceae family and close …

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

L Cooper, A Meier, MA Laporte, JL Elser… - Nucleic acids …, 2018 - academic.oup.com
Abstract The Planteome project (http://www. planteome. org) provides a suite of reference
and species-specific ontologies for plants and annotations to genes and phenotypes …

[HTML][HTML] An ontology model to represent aquaponics 4.0 system's knowledge

R Abbasi, P Martinez, R Ahmad - Information Processing in Agriculture, 2022 - Elsevier
Aquaponics, one of the vertical farming methods, is a combination of aquaculture and
hydroponics. To enhance the production capabilities of the aquaponics system and …

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

EA Papoutsoglou, D Faria, D Arend, E Arnaud… - New …, 2020 - Wiley Online Library
Enabling data reuse and knowledge discovery is increasingly critical in modern science,
and requires an effort towards standardising data publication practices. This is particularly …

Towards recommendations for metadata and data handling in plant phenotyping

P Krajewski, D Chen, H Ćwiek… - Journal of …, 2015 - academic.oup.com
Recent methodological developments in plant phenotyping, as well as the growing
importance of its applications in plant science and breeding, are resulting in a fast …

Transforming the study of organisms: Phenomic data models and knowledge bases

AE Thessen, RL Walls, L Vogt, J Singer… - PLoS computational …, 2020 - journals.plos.org
The rapidly decreasing cost of gene sequencing has resulted in a deluge of genomic data
from across the tree of life; however, outside a few model organism databases, genomic …

Toward a data infrastructure for the Plant Cell Atlas

N Fahlgren, M Kapoor, G Yordanova… - Plant …, 2023 - academic.oup.com
We review how a data infrastructure for the Plant Cell Atlas might be built using existing
infrastructure and platforms. The Human Cell Atlas has developed an extensive …

A trait‐based model ensemble approach to design rice plant types for future climate

L Paleari, T Li, Y Yang, LT Wilson… - Global Change …, 2022 - Wiley Online Library
Crop models are powerful tools to support breeding because of their capability to explore
genotype× environment× management interactions that can help design promising plant …

The plant ontology: a tool for plant genomics

L Cooper, P Jaiswal - Plant bioinformatics: Methods and protocols, 2016 - Springer
The use of controlled, structured vocabularies (ontologies) has become a critical tool for
scientists in the post-genomic era of massive datasets. Adoption and integration of common …