Oscillation patterns in negative feedback loops

S Pigolotti, S Krishna… - Proceedings of the …, 2007 - National Acad Sciences
Organisms are equipped with regulatory systems that display a variety of dynamical
behavior ranging from simple stable steady states, to switching and multistability, to …

A tale of two rhythms: Locked clocks and chaos in biology

ML Heltberg, S Krishna, LP Kadanoff, MH Jensen - Cell Systems, 2021 - cell.com
The fundamental mechanisms that control and regulate biological organisms exhibit a
surprising level of complexity. Oscillators are perhaps the simplest motifs that produce time …

Oscillations and variability in the p53 system

N Geva‐Zatorsky, N Rosenfeld, S Itzkovitz… - Molecular systems …, 2006 - embopress.org
Understanding the dynamics and variability of protein circuitry requires accurate
measurements in living cells as well as theoretical models. To address this, we employed …

Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage

E Batchelor, CS Mock, I Bhan, A Loewer, G Lahav - Molecular cell, 2008 - cell.com
DNA damage initiates a series of p53 pulses. Although much is known about the interactions
surrounding p53, little is known about which interactions contribute to p53's dynamical …

Cell fate decision mediated by p53 pulses

XP Zhang, F Liu, Z Cheng… - Proceedings of the …, 2009 - National Acad Sciences
The tumor suppressor p53 plays a crucial role in cellular response to various stresses.
Recent experiments have shown that p53 level exhibits a series of pulses after DNA …

Enhanced DNA repair through droplet formation and p53 oscillations

MS Heltberg, A Lucchetti, FS Hsieh, DPM Nguyen… - Cell, 2022 - cell.com
Living organisms are constantly exposed to DNA damage, and optimal repair is therefore
crucial. A characteristic hallmark of the response is the formation of sub-compartments …

[PDF][PDF] Sustained oscillations and time delays in gene expression of protein Hes1

MH Jensen, K Sneppen, G Tiana - Febs Letters, 2003 - core.ac.uk
A number of genes change their expression pattern dynamically by displaying oscillations.
In a few important cases these oscillations are sustained and can work as molecular clocks …

Minimal model of spiky oscillations in NF-κB signaling

S Krishna, MH Jensen… - Proceedings of the …, 2006 - National Acad Sciences
The NF-κB signaling system is involved in a variety of cellular processes including immune
response, inflammation, and apoptosis. Recent experiments have found oscillations in the …

From structure to dynamics: frequency tuning in the p53–mdm2 network: I. logical approach

W Abou-Jaoudé, DA Ouattara, M Kaufman - Journal of theoretical biology, 2009 - Elsevier
We investigate the dynamical properties of a simple four-variable model describing the
interactions between the tumour suppressor protein p53, its main negative regulator Mdm2 …

Oscillations and temporal signalling in cells

G Tiana, S Krishna, S Pigolotti, MH Jensen… - Physical …, 2007 - iopscience.iop.org
The development of new techniques to quantitatively measure gene expression in cells has
shed light on a number of systems that display oscillations in protein concentration. Here we …