Metagenomics methods for the study of plant-associated microbial communities: a review

AE Fadiji, OO Babalola - Journal of microbiological methods, 2020 - Elsevier
Plant microbiota have different effects on the plant which can be beneficial or pathogenic. In
this study, we concentrated on beneficial microbes associated with plants using endophytic …

“Omics” tools for better understanding the plant–endophyte interactions

S Kaul, T Sharma, M K. Dhar - Frontiers in plant science, 2016 - frontiersin.org
Endophytes, which mostly include bacteria, fungi and actinomycetes, are the endosymbionts
that reside asymptomatically in plants for at least a part of their life cycle. They have …

Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms

Q Wu, SW Ding, Y Zhang, S Zhu - Annual review of …, 2015 - annualreviews.org
A fast, accurate, and full indexing of viruses and viroids in a sample for the inspection and
quarantine services and disease management is desirable but was unrealistic until recently …

Non-coding RNAs in legumes: their emerging roles in regulating biotic/abiotic stress responses and plant growth and development

U Chand Jha, H Nayyar, N Mantri, KHM Siddique - Cells, 2021 - mdpi.com
Noncoding RNAs, including microRNAs (miRNAs), small interference RNAs (siRNAs),
circular RNA (circRNA), and long noncoding RNAs (lncRNAs), control gene expression at …

Bacterial pathogenesis of plants: future challenges from a microbial perspective: challenges in bacterial molecular plant pathology

S Pfeilmeier, DL Caly, JG Malone - Molecular plant pathology, 2016 - Wiley Online Library
Summary Future Challenges in Plant Pathology Plant infection is a complicated process. On
encountering a plant, pathogenic microorganisms must first adapt to life on the epiphytic …

Impact of metagenomic DNA extraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench)

MKA Maropola, JB Ramond, M Trindade - Journal of Microbiological …, 2015 - Elsevier
Culture-independent studies rely on the quantity and quality of the extracted environmental
metagenomic DNA (mDNA). To fully access the plant tissue microbiome, the extracted plant …

Microbial community dynamics and response to plant growth-promoting microorganisms in the rhizosphere of four common food crops cultivated in hydroponics

C Sheridan, P Depuydt, M De Ro, C Petit… - Microbial ecology, 2017 - Springer
Plant growth promoting microorganisms (PGPMs) of the plant root zone microbiome have
received limited attention in hydroponic cultivation systems. In the framework of a project …

Multidimensional approaches for studying plant defence against insects: from ecology to omics and synthetic biology

P Barah, AM Bones - Journal of Experimental Botany, 2015 - academic.oup.com
The biggest challenge for modern biology is to integrate multidisciplinary approaches
towards understanding the organizational and functional complexity of biological systems at …

'Omics' tools in soil microbiology: the state of the art

R Biswas, A Sarkar - Advances in Soil Microbiology: Recent Trends and …, 2018 - Springer
The soil being the most heterogeneous substance hosts the dynamic environments for
diverse microorganisms. Traditional techniques are limited to explore only few portion of …

micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules

DB Holt, V Gupta, D Meyer, NB Abel… - New …, 2015 - Wiley Online Library
Legumes interact with rhizobial bacteria to form nitrogen‐fixing root nodules. Host signalling
following mutual recognition ensures a specific response, but is only partially understood …