Mass spectrometry applied to bottom-up proteomics: entering the high-throughput era for hypothesis testing
LC Gillet, A Leitner, R Aebersold - Annual review of analytical …, 2016 - annualreviews.org
Proteins constitute a key class of molecular components that perform essential biochemical
reactions in living cells. Whether the aim is to extensively characterize a given protein or to …
reactions in living cells. Whether the aim is to extensively characterize a given protein or to …
Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
M Bantscheff, S Lemeer, MM Savitski… - Analytical and bioanalytical …, 2012 - Springer
Mass-spectrometry-based proteomics is continuing to make major contributions to the
discovery of fundamental biological processes and, more recently, has also developed into …
discovery of fundamental biological processes and, more recently, has also developed into …
IonQuant enables accurate and sensitive label-free quantification with FDR-controlled match-between-runs
Missing values weaken the power of label-free quantitative proteomic experiments to
uncover true quantitative differences between biological samples or experimental …
uncover true quantitative differences between biological samples or experimental …
Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics
We present a data-independent acquisition mass spectrometry method, ultradefinition (UD)
MSE. This approach utilizes ion mobility drift time-specific collision-energy profiles to …
MSE. This approach utilizes ion mobility drift time-specific collision-energy profiles to …
MPLEx: a robust and universal protocol for single-sample integrative proteomic, metabolomic, and lipidomic analyses
ES Nakayasu, CD Nicora, AC Sims… - …, 2016 - Am Soc Microbiol
Integrative multi-omics analyses can empower more effective investigation and complete
understanding of complex biological systems. Despite recent advances in a range of omics …
understanding of complex biological systems. Despite recent advances in a range of omics …
Sources of technical variability in quantitative LC–MS proteomics: human brain tissue sample analysis
PD Piehowski, VA Petyuk, DJ Orton, F Xie… - Journal of proteome …, 2013 - ACS Publications
To design a robust quantitative proteomics study, an understanding of both the inherent
heterogeneity of the biological samples being studied as well as the technical variability of …
heterogeneity of the biological samples being studied as well as the technical variability of …
Extending the depth of human plasma proteome coverage using simple fractionation techniques
Human plasma is one of the most widely used tissues in clinical analysis, and plasma-based
biomarkers are used for monitoring patient health status and/or response to medical …
biomarkers are used for monitoring patient health status and/or response to medical …
New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells
Mass-spectrometry based omics technologies–namely proteomics, metabolomics and
lipidomics–have enabled the molecular level systems biology investigation of organisms in …
lipidomics–have enabled the molecular level systems biology investigation of organisms in …
Improving Qualitative and Quantitative Performance for MSE-based Label-free Proteomics
NJ Bond, PV Shliaha, KS Lilley… - Journal of proteome …, 2013 - ACS Publications
Label-free quantitation by data independent methods (for instance MSE) is growing in
popularity due to the high technical reproducibility of mass spectrometry analysis. The recent …
popularity due to the high technical reproducibility of mass spectrometry analysis. The recent …
Mycobacterium tuberculosis Ser/Thr Protein Kinase B Mediates an Oxygen-Dependent Replication Switch
The majority of Mycobacterium tuberculosis (Mtb) infections are clinically latent,
characterized by drug tolerance and little or no bacterial replication. Low oxygen tension is a …
characterized by drug tolerance and little or no bacterial replication. Low oxygen tension is a …