Computational design of synthetic enzymes

V Vaissier Welborn, T Head-Gordon - Chemical reviews, 2018 - ACS Publications
We review the standard model for de novo computational design of enzymes, which
primarily focuses on the development of an active-site geometry, composed of protein …

Relating protein motion to catalysis

S Hammes-Schiffer, SJ Benkovic - Annu. Rev. Biochem., 2006 - annualreviews.org
This review examines the linkage between protein conformational motions and enzyme
catalysis. The fundamental issues related to this linkage are probed in the context of two …

[图书][B] Isotope effects in chemistry and biology

A Kohen, HH Limbach - 2005 - taylorfrancis.com
The field of isotope effects has expanded exponentially in the last decade, and researchers
are finding isotopes increasingly useful in their studies. Bringing literature on the subject up …

Good vibrations in enzyme-catalysed reactions

S Hay, NS Scrutton - Nature chemistry, 2012 - nature.com
Fast motions (femtosecond to picosecond) and their potential involvement during enzyme-
catalysed reactions have ignited considerable interest in recent years. Their influence on …

Hydrogen tunneling in enzymes and biomimetic models

JP Layfield, S Hammes-Schiffer - Chemical reviews, 2014 - ACS Publications
Hydrogen transfer reactions play an important role throughout chemistry and biology. In
general, hydrogen transfer reactions encompass proton and hydride transfer, which are …

Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions

J Pu, J Gao, DG Truhlar - Chemical reviews, 2006 - ACS Publications
Although many aspects of enzyme catalysis have been constructively analyzed, 1-52 there
are still many aspects that are imperfectly understood. Of particular interest in this regard are …

Atomic description of an enzyme reaction dominated by proton tunneling

L Masgrau, A Roujeinikova, LO Johannissen, P Hothi… - Science, 2006 - science.org
We present an atomic-level description of the reaction chemistry of an enzyme-catalyzed
reaction dominated by proton tunneling. By solving structures of reaction intermediates at …

Tunneling and dynamics in enzymatic hydride transfer

ZD Nagel, JP Klinman - Chemical reviews, 2006 - ACS Publications
Enzymes continue to be the subject of intensive research efforts because of their ability to
accelerate chemical reactions by factors as large as 1020 with extraordinary selectivity. 1 …

Environmentally coupled hydrogen tunneling: Linking catalysis to dynamics

MJ Knapp, JP Klinman - European Journal of Biochemistry, 2002 - Wiley Online Library
Many biological C‐H activation reactions exhibit nonclassical kinetic isotope effects (KIEs).
These nonclassical KIEs are too large (kH/kD> 7) and/or exhibit unusual temperature …

Correlated motion and the effect of distal mutations in dihydrofolate reductase

TH Rod, JL Radkiewicz… - Proceedings of the …, 2003 - National Acad Sciences
Dihydrofolate reductase (DHFR) catalyzes the reduction of dihydrofolate to tetrahydrofolate.
The catalytic rate in this system has been found to be significantly affected by mutations far …