Exploring tissue architecture using spatial transcriptomics
Deciphering the principles and mechanisms by which gene activity orchestrates complex
cellular arrangements in multicellular organisms has far-reaching implications for research …
cellular arrangements in multicellular organisms has far-reaching implications for research …
Clinical and translational values of spatial transcriptomics
L Zhang, D Chen, D Song, X Liu, Y Zhang… - … and Targeted Therapy, 2022 - nature.com
The combination of spatial transcriptomics (ST) and single cell RNA sequencing (scRNA-
seq) acts as a pivotal component to bridge the pathological phenomes of human tissues with …
seq) acts as a pivotal component to bridge the pathological phenomes of human tissues with …
Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions
In the past decades, transcriptomic studies have revolutionized cancer treatment and
diagnosis. However, tumor sequencing strategies typically result in loss of spatial …
diagnosis. However, tumor sequencing strategies typically result in loss of spatial …
Unraveling B cell trajectories at single cell resolution
D Morgan, V Tergaonkar - Trends in immunology, 2022 - cell.com
During adaptive immunity, B cells differentiate either into memory B cells or plasma cells and
produce antibodies against foreign antigens to fight infection. Additionally, they behave as …
produce antibodies against foreign antigens to fight infection. Additionally, they behave as …
Seamless integration of image and molecular analysis for spatial transcriptomics workflows
Background Recent advancements in in situ gene expression technologies constitute a new
and rapidly evolving field of transcriptomics. With the recent launch of the 10x Genomics …
and rapidly evolving field of transcriptomics. With the recent launch of the 10x Genomics …
Tumor cell invasion in glioblastoma
A Vollmann-Zwerenz, V Leidgens, G Feliciello… - International journal of …, 2020 - mdpi.com
Glioblastoma (GBM) is a particularly devastating tumor with a median survival of about 16
months. Recent research has revealed novel insights into the outstanding heterogeneity of …
months. Recent research has revealed novel insights into the outstanding heterogeneity of …
Integrated spatial multiomics reveals fibroblast fate during tissue repair
In the skin, tissue injury results in fibrosis in the form of scars composed of dense
extracellular matrix deposited by fibroblasts. The therapeutic goal of regenerative wound …
extracellular matrix deposited by fibroblasts. The therapeutic goal of regenerative wound …
Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium
S Vickovic, D Schapiro, K Carlberg, B Lötstedt… - Communications …, 2022 - nature.com
The inflamed rheumatic joint is a highly heterogeneous and complex tissue with dynamic
recruitment and expansion of multiple cell types that interact in multifaceted ways within a …
recruitment and expansion of multiple cell types that interact in multifaceted ways within a …
CellDART: cell type inference by domain adaptation of single-cell and spatial transcriptomic data
Deciphering the cellular composition in genome-wide spatially resolved transcriptomic data
is a critical task to clarify the spatial context of cells in a tissue. In this study, we developed a …
is a critical task to clarify the spatial context of cells in a tissue. In this study, we developed a …
Distinct disease-specific Tfh cell populations in 2 different fibrotic diseases: IgG4-related disease and Kimura disease
R Munemura, T Maehara, Y Murakami, R Koga… - Journal of Allergy and …, 2022 - Elsevier
Background How T follicular (Tfh) cells contribute to many different B-cell class-switching
events during T-cell–dependent immune responses has been unclear. Diseases with …
events during T-cell–dependent immune responses has been unclear. Diseases with …