Genomics of evolutionary novelty in hybrids and polyploids

G Nieto Feliner, J Casacuberta, JF Wendel - Frontiers in genetics, 2020 - frontiersin.org
It has long been recognized that hybridization and polyploidy are prominent processes in
plant evolution. Although classically recognized as significant in speciation and adaptation …

How transposable elements are recognized and epigenetically silenced in plants?

B Liu, M Zhao - Current Opinion in Plant Biology, 2023 - Elsevier
Plant genomes are littered with transposable elements (TEs). Because TEs are potentially
highly mutagenic, host organisms have evolved a set of defense mechanisms to recognize …

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

J Salojärvi, A Rambani, Z Yu, R Guyot, S Strickler… - Nature …, 2024 - nature.com
Coffea arabica, an allotetraploid hybrid of Coffea eugenioides and Coffea canephora, is the
source of approximately 60% of coffee products worldwide, and its cultivated accessions …

Gradual evolution of allopolyploidy in Arabidopsis suecica

R Burns, T Mandáková, J Gunis… - Nature Ecology & …, 2021 - nature.com
Most diploid organisms have polyploid ancestors. The evolutionary process of
polyploidization is poorly understood but has frequently been conjectured to involve some …

Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome

KH Jia, H Liu, RG Zhang, J Xu, SS Zhou… - Horticulture …, 2021 - academic.oup.com
Polyploidization plays a key role in plant evolution, but the forces driving the fate of
homoeologs in polyploid genomes, ie, paralogs resulting from a whole-genome duplication …

The Role of Hybridization in Species Formation and Persistence

JV Peñalba, A Runemark, JI Meier… - Cold Spring …, 2024 - cshperspectives.cshlp.org
Hybridization, or interbreeding between different taxa, was traditionally considered to be
rare and to have a largely detrimental impact on biodiversity, sometimes leading to the …

The genomic shock hypothesis: genetic and epigenetic alterations of transposable elements after interspecific hybridization in plants

C de Tomás, CM Vicient - Epigenomes, 2023 - mdpi.com
Transposable elements (TEs) are major components of plant genomes with the ability to
change their position in the genome or to create new copies of themselves in other positions …

The effect of hybridization on transposable element accumulation in an undomesticated fungal species

M Hénault, S Marsit, G Charron, CR Landry - Elife, 2020 - elifesciences.org
Transposable elements (TEs) are mobile genetic elements that can profoundly impact the
evolution of genomes and species. A long-standing hypothesis suggests that hybridization …

Hybridization and gene expression: Beyond differentially expressed genes

A Runemark, EC Moore, EL Larson - Molecular Ecology, 2024 - Wiley Online Library
Gene expression has a key role in reproductive isolation, and studies of hybrid gene
expression have identified mechanisms causing hybrid sterility. Here, we review the …

Transposable element mobilization in interspecific yeast hybrids

C Smukowski Heil, K Patterson… - Genome Biology and …, 2021 - academic.oup.com
Barbara McClintock first hypothesized that interspecific hybridization could provide a
“genomic shock” that leads to the mobilization of transposable elements (TEs). This …