Eleven grand challenges in single-cell data science

D Lähnemann, J Köster, E Szczurek, DJ McCarthy… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

The mathematics of cancer: integrating quantitative models

PM Altrock, LL Liu, F Michor - Nature Reviews Cancer, 2015 - nature.com
Mathematical modelling approaches have become increasingly abundant in cancer
research. The complexity of cancer is well suited to quantitative approaches as it provides …

Tumor evolution: Linear, branching, neutral or punctuated?

A Davis, R Gao, N Navin - Biochimica et Biophysica Acta (BBA)-Reviews …, 2017 - Elsevier
Intratumor heterogeneity has been widely reported in human cancers, but our knowledge of
how this genetic diversity emerges over time remains limited. A central challenge in studying …

Preneoplastic stromal cells promote BRCA1-mediated breast tumorigenesis

K Nee, D Ma, QH Nguyen, M Pein, N Pervolarakis… - Nature …, 2023 - nature.com
Women with germline BRCA1 mutations (BRCA1+/mut) have increased risk for hereditary
breast cancer. Cancer initiation in BRCA1+/mut is associated with premalignant changes in …

Role of MSC in the Tumor Microenvironment

R Hass - Cancers, 2020 - mdpi.com
The tumor microenvironment represents a dynamically composed matrix in which tissue-
associated cancer cells are embedded together with a variety of further cell types to form a …

MSC-derived extracellular vesicles in tumors and therapy

T Luo, J von der Ohe, R Hass - Cancers, 2021 - mdpi.com
Simple Summary Therapeutic functions of mesenchymal stroma-/stem-like cells (MSCs) are
mediated predominantly through paracrine effects by the release of various different …

Cancer stem cell niche models and contribution by mesenchymal stroma/stem cells

C Melzer, J von der Ohe, H Lehnert, H Ungefroren… - Molecular cancer, 2017 - Springer
Background The initiation and progression of malignant tumors is driven by distinct subsets
of tumor-initiating or cancer stem-like cells (CSCs) which develop therapy/apoptosis …

Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability

F Raynaud, M Mina, D Tavernari, G Ciriello - PLoS genetics, 2018 - journals.plos.org
Genomic instability is a major driver of intra-tumor heterogeneity. However, unstable
genomes often exhibit different molecular and clinical phenotypes, which are associated …

Evolutionary mechanisms and diversity in cancer

HHQ Heng, JB Stevens, SW Bremer, G Liu… - Advances in cancer …, 2011 - Elsevier
The recently introduced genome theory of cancer evolution provides a new framework for
evolutionary studies on cancer. In particular, the established relationship between the large …

Spatial structure increases the waiting time for cancer

EA Martens, R Kostadinov, CC Maley… - New journal of …, 2011 - iopscience.iop.org
Cancer results from a sequence of genetic and epigenetic changes that lead to a variety of
abnormal phenotypes including increased proliferation and survival of somatic cells and …