Status and prospects of association mapping in plants

C Zhu, M Gore, ES Buckler, J Yu - The plant genome, 2008 - Wiley Online Library
There is tremendous interest in using association mapping to identify genes responsible for
quantitative variation of complex traits with agricultural and evolutionary importance. Recent …

Getting to the roots of it: genetic and hormonal control of root architecture

JKH Jung, S McCouch - Frontiers in plant science, 2013 - frontiersin.org
Root system architecture (RSA)–the spatial configuration of a root system–is an important
developmental and agronomic trait, with implications for overall plant architecture, growth …

SIFT missense predictions for genomes

R Vaser, S Adusumalli, SN Leng, M Sikic, PC Ng - Nature protocols, 2016 - nature.com
The SIFT (sorting intolerant from tolerant) algorithm helps bridge the gap between mutations
and phenotypic variations by predicting whether an amino acid substitution is deleterious …

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

KL McNally, KL Childs, R Bohnert… - Proceedings of the …, 2009 - National Acad Sciences
Rice, the primary source of dietary calories for half of humanity, is the first crop plant for
which a high-quality reference genome sequence from a single variety was produced. We …

Abiotic stress and control of grain number in cereals

R Dolferus, X Ji, RA Richards - Plant science, 2011 - Elsevier
Grain number is the only yield component that is directly associated with increased grain
yield in important cereal crops like wheat. Historical yield studies show that increases in …

Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana

RM Clark, G Schweikert, C Toomajian, S Ossowski… - science, 2007 - science.org
The genomes of individuals from the same species vary in sequence as a result of different
evolutionary processes. To examine the patterns of, and the forces shaping, sequence …

Genetic and genomic approaches to develop rice germplasm for problem soils

AM Ismail, S Heuer, MJ Thomson, M Wissuwa - Plant molecular biology, 2007 - Springer
Soils that contain toxic amounts of minerals or are deficient in essential plant nutrients are
widespread globally and seriously constrain rice production. New methods are necessary to …

Gene nomenclature system for rice

SR McCouch… - Rice, 2008 - Springer
Abstract The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the
Rice Genetics Cooperative has revised the gene nomenclature system for rice (Oryza) to …

Array-based high-throughput DNA markers for crop improvement

PK Gupta, S Rustgi, RR Mir - Heredity, 2008 - nature.com
The last two decades have witnessed a remarkable activity in the development and use of
molecular markers both in animal and plant systems. This activity started with low …

Natural genetic variation in plant photosynthesis

PJ Flood, J Harbinson, MGM Aarts - Trends in plant science, 2011 - cell.com
Natural genetic variation in plant photosynthesis is a largely unexplored and as a result an
underused genetic resource for crop improvement. Numerous studies show genetic …