Long noncoding RNAs in plants

AT Wierzbicki, T Blevins… - Annual Review of Plant …, 2021 - annualreviews.org
Plants have an extraordinary diversity of transcription machineries, including five nuclear
DNA-dependent RNA polymerases. Four of these enzymes are dedicated to the production …

Transposable elements contribute to dynamic genome content in maize

SN Anderson, MC Stitzer, AB Brohammer… - The Plant …, 2019 - Wiley Online Library
Transposable elements (TE s) are ubiquitous components of eukaryotic genomes and can
create variation in genome organization and content. Most maize genomes are composed of …

[HTML][HTML] Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in …

J Xu, G Chen, PJ Hermanson, Q Xu, C Sun, W Chen… - Genome biology, 2019 - Springer
Background DNA methylation can provide a source of heritable information that is
sometimes entirely uncoupled from genetic variation. However, the extent of this uncoupling …

[HTML][HTML] The genomic ecosystem of transposable elements in maize

MC Stitzer, SN Anderson, NM Springer… - PLoS …, 2021 - journals.plos.org
Transposable elements (TEs) constitute the majority of flowering plant DNA, reflecting their
tremendous success in subverting, avoiding, and surviving the defenses of their host …

Transposable elements: all mobile, all different, some stress responsive, some adaptive?

S Lanciano, M Mirouze - Current opinion in genetics & development, 2018 - Elsevier
Highlights•Stress impacts on some TEs through their stress responsive cis-elements.•Stress
impacts on the host epigenetic machinery.•Intraspecific TE polymorphisms in the wild are …

Exploring impact of recombination landscapes on breeding outcomes

R Epstein, N Sajai, M Zelkowski… - Proceedings of the …, 2023 - National Acad Sciences
Plant breeding relies on crossing-over to create novel combinations of alleles needed to
confer increased productivity and other desired traits in new varieties. However, crossover …

[HTML][HTML] Monitoring the interplay between transposable element families and DNA methylation in maize

JM Noshay, SN Anderson, P Zhou, L Ji, W Ricci… - PLoS …, 2019 - journals.plos.org
DNA methylation and epigenetic silencing play important roles in the regulation of
transposable elements (TEs) in many eukaryotic genomes. A majority of the maize genome …

Heritable epigenomic changes to the maize methylome resulting from tissue culture

Z Han, PA Crisp, S Stelpflug, SM Kaeppler, Q Li… - Genetics, 2018 - academic.oup.com
DNA methylation can contribute to the maintenance of genome integrity and regulation of
gene expression. In most situations, DNA methylation patterns are inherited quite stably …

[HTML][HTML] The evolutionary volte-face of transposable elements: from harmful jumping genes to major drivers of genetic innovation

M Nicolau, N Picault, G Moissiard - Cells, 2021 - mdpi.com
Transposable elements (TEs) are self-replicating DNA elements that constitute major
fractions of eukaryote genomes. Their ability to transpose can modify the genome structure …

[HTML][HTML] RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs

R Yaari, A Katz, K Domb, KD Harris, A Zemach… - Nature …, 2019 - nature.com
To properly regulate the genome, cytosine methylation is established by animal DNA
methyltransferase 3 s (DNMT3s). While altered DNMT3 homologs, Domains rearranged …