Long noncoding RNAs in plants
AT Wierzbicki, T Blevins… - Annual Review of Plant …, 2021 - annualreviews.org
Plants have an extraordinary diversity of transcription machineries, including five nuclear
DNA-dependent RNA polymerases. Four of these enzymes are dedicated to the production …
DNA-dependent RNA polymerases. Four of these enzymes are dedicated to the production …
Transposable elements contribute to dynamic genome content in maize
SN Anderson, MC Stitzer, AB Brohammer… - The Plant …, 2019 - Wiley Online Library
Transposable elements (TE s) are ubiquitous components of eukaryotic genomes and can
create variation in genome organization and content. Most maize genomes are composed of …
create variation in genome organization and content. Most maize genomes are composed of …
[HTML][HTML] Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in …
J Xu, G Chen, PJ Hermanson, Q Xu, C Sun, W Chen… - Genome biology, 2019 - Springer
Background DNA methylation can provide a source of heritable information that is
sometimes entirely uncoupled from genetic variation. However, the extent of this uncoupling …
sometimes entirely uncoupled from genetic variation. However, the extent of this uncoupling …
[HTML][HTML] The genomic ecosystem of transposable elements in maize
Transposable elements (TEs) constitute the majority of flowering plant DNA, reflecting their
tremendous success in subverting, avoiding, and surviving the defenses of their host …
tremendous success in subverting, avoiding, and surviving the defenses of their host …
Transposable elements: all mobile, all different, some stress responsive, some adaptive?
S Lanciano, M Mirouze - Current opinion in genetics & development, 2018 - Elsevier
Highlights•Stress impacts on some TEs through their stress responsive cis-elements.•Stress
impacts on the host epigenetic machinery.•Intraspecific TE polymorphisms in the wild are …
impacts on the host epigenetic machinery.•Intraspecific TE polymorphisms in the wild are …
Exploring impact of recombination landscapes on breeding outcomes
R Epstein, N Sajai, M Zelkowski… - Proceedings of the …, 2023 - National Acad Sciences
Plant breeding relies on crossing-over to create novel combinations of alleles needed to
confer increased productivity and other desired traits in new varieties. However, crossover …
confer increased productivity and other desired traits in new varieties. However, crossover …
[HTML][HTML] Monitoring the interplay between transposable element families and DNA methylation in maize
DNA methylation and epigenetic silencing play important roles in the regulation of
transposable elements (TEs) in many eukaryotic genomes. A majority of the maize genome …
transposable elements (TEs) in many eukaryotic genomes. A majority of the maize genome …
Heritable epigenomic changes to the maize methylome resulting from tissue culture
DNA methylation can contribute to the maintenance of genome integrity and regulation of
gene expression. In most situations, DNA methylation patterns are inherited quite stably …
gene expression. In most situations, DNA methylation patterns are inherited quite stably …
[HTML][HTML] The evolutionary volte-face of transposable elements: from harmful jumping genes to major drivers of genetic innovation
Transposable elements (TEs) are self-replicating DNA elements that constitute major
fractions of eukaryote genomes. Their ability to transpose can modify the genome structure …
fractions of eukaryote genomes. Their ability to transpose can modify the genome structure …
[HTML][HTML] RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs
To properly regulate the genome, cytosine methylation is established by animal DNA
methyltransferase 3 s (DNMT3s). While altered DNMT3 homologs, Domains rearranged …
methyltransferase 3 s (DNMT3s). While altered DNMT3 homologs, Domains rearranged …