Protein acetylation in metabolism—metabolites and cofactors
KJ Menzies, H Zhang, E Katsyuba… - Nature Reviews …, 2016 - nature.com
Reversible acetylation was initially described as an epigenetic mechanism regulating DNA
accessibility. Since then, this process has emerged as a controller of histone and nonhistone …
accessibility. Since then, this process has emerged as a controller of histone and nonhistone …
[HTML][HTML] Comparing protein abundance and mRNA expression levels on a genomic scale
Attempts to correlate protein abundance with mRNA expression levels have had variable
success. We review the results of these comparisons, focusing on yeast. In the process, we …
success. We review the results of these comparisons, focusing on yeast. In the process, we …
[HTML][HTML] Definition of a high-confidence mitochondrial proteome at quantitative scale
M Morgenstern, SB Stiller, P Lübbert, CD Peikert… - Cell reports, 2017 - cell.com
Mitochondria perform central functions in cellular bioenergetics, metabolism, and signaling,
and their dysfunction has been linked to numerous diseases. The available studies cover …
and their dysfunction has been linked to numerous diseases. The available studies cover …
[HTML][HTML] COMPARTMENTS: unification and visualization of protein subcellular localization evidence
Information on protein subcellular localization is important to understand the cellular
functions of proteins. Currently, such information is manually curated from the literature …
functions of proteins. Currently, such information is manually curated from the literature …
Compartmentalization of metabolic pathways in yeast mitochondria improves the production of branched-chain alcohols
JL Avalos, GR Fink, G Stephanopoulos - Nature biotechnology, 2013 - nature.com
Efforts to improve the production of a compound of interest in Saccharomyces cerevisiae
have mainly involved engineering or overexpression of cytoplasmic enzymes. We show that …
have mainly involved engineering or overexpression of cytoplasmic enzymes. We show that …
WoLF PSORT: protein localization predictor
P Horton, KJ Park, T Obayashi, N Fujita… - Nucleic acids …, 2007 - academic.oup.com
WoLF PSORT is an extension of the PSORT II program for protein subcellular location
prediction. WoLF PSORT converts protein amino acid sequences into numerical localization …
prediction. WoLF PSORT converts protein amino acid sequences into numerical localization …
Global analysis of protein localization in budding yeast
WK Huh, JV Falvo, LC Gerke, AS Carroll, RW Howson… - Nature, 2003 - nature.com
A fundamental goal of cell biology is to define the functions of proteins in the context of
compartments that organize them in the cellular environment. Here we describe the …
compartments that organize them in the cellular environment. Here we describe the …
[HTML][HTML] A mitochondrial protein compendium elucidates complex I disease biology
Mitochondria are complex organelles whose dysfunction underlies a broad spectrum of
human diseases. Identifying all of the proteins resident in this organelle and understanding …
human diseases. Identifying all of the proteins resident in this organelle and understanding …
Locating proteins in the cell using TargetP, SignalP and related tools
Determining the subcellular localization of a protein is an important first step toward
understanding its function. Here, we describe the properties of three well-known N-terminal …
understanding its function. Here, we describe the properties of three well-known N-terminal …
Microbial acetyl-CoA metabolism and metabolic engineering
Recent concerns over the sustainability of petrochemical-based processes for production of
desired chemicals have fueled research into alternative modes of production. Metabolic …
desired chemicals have fueled research into alternative modes of production. Metabolic …