Histone post-translational modifications—cause and consequence of genome function

G Millán-Zambrano, A Burton, AJ Bannister… - Nature Reviews …, 2022 - nature.com
Much has been learned since the early 1960s about histone post-translational modifications
(PTMs) and how they affect DNA-templated processes at the molecular level. This …

The cancer driver genes IDH1/2, JARID1C/ KDM5C, and UTX/ KDM6A: crosstalk between histone demethylation and hypoxic reprogramming in cancer metabolism

S Chang, S Yim, H Park - Experimental & molecular medicine, 2019 - nature.com
Recent studies on mutations in cancer genomes have distinguished driver mutations from
passenger mutations, which occur as byproducts of cancer development. The cancer …

Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin

M Tedesco, F Giannese, D Lazarević, V Giansanti… - Nature …, 2022 - nature.com
Recent efforts have succeeded in surveying open chromatin at the single-cell level, but high-
throughput, single-cell assessment of heterochromatin and its underlying genomic …

The emerging role of KDM5A in human cancer

GJ Yang, MH Zhu, XJ Lu, YJ Liu, JF Lu… - Journal of hematology & …, 2021 - Springer
Histone methylation is a key posttranslational modification of chromatin, and its
dysregulation affects a wide array of nuclear activities including the maintenance of genome …

Selectivity of ORC binding sites and the relation to replication timing, fragile sites, and deletions in cancers

B Miotto, Z Ji, K Struhl - Proceedings of the National …, 2016 - National Acad Sciences
The origin recognition complex (ORC) binds sites from which DNA replication is initiated. We
address ORC binding selectivity in vivo by mapping∼ 52,000 ORC2 binding sites …

Histone demethylases in chromatin biology and beyond

E Dimitrova, AH Turberfield, RJ Klose - EMBO reports, 2015 - embopress.org
Histone methylation plays fundamental roles in regulating chromatin‐based processes. With
the discovery of histone demethylases over a decade ago, it is now clear that histone …

[HTML][HTML] DNA replication origins—where do we begin?

MN Prioleau, DM MacAlpine - Genes & development, 2016 - genesdev.cshlp.org
For more than three decades, investigators have sought to identify the precise locations
where DNA replication initiates in mammalian genomes. The development of molecular and …

X chromosome escapee genes are involved in ischemic sexual dimorphism through epigenetic modification of inflammatory signals

S Qi, A Al Mamun, C Ngwa, S Romana, R Ritzel… - Journal of …, 2021 - Springer
Background Stroke is a sexually dimorphic disease. Previous studies have found that young
females are protected against ischemia compared to males, partially due to the protective …

Integrative analysis of DNA replication origins and ORC-/MCM-binding sites in human cells reveals a lack of overlap

M Tian, Z Wang, Z Su, E Shibata, Y Shibata, A Dutta… - Elife, 2024 - elifesciences.org
Based on experimentally determined average inter-origin distances of~ 100 kb, DNA
replication initiates from~ 50,000 origins on human chromosomes in each cell cycle. The …

Therapeutic effect of a histone demethylase inhibitor in Parkinson's disease

MD Mu, ZM Qian, SX Yang, KL Rong, WH Yung… - Cell Death & …, 2020 - nature.com
Iron accumulation in the substantia nigra is recognized as a hallmark of Parkinson's disease
(PD). Therefore, reducing accumulated iron and associated oxidative stress is considered a …