[HTML][HTML] Apoptosis: A mammalian cell bioprocessing perspective

AL Grilo, A Mantalaris - Biotechnology advances, 2019 - Elsevier
Apoptosis is a form of programmed and controlled cell death that accounts for the majority of
cellular death in bioprocesses. Cell death affects culture longevity and product quality; it is …

Sensitivity analysis approaches applied to systems biology models

Z Zi - IET systems biology, 2011 - IET
With the rising application of systems biology, sensitivity analysis methods have been widely
applied to study the biological systems, including metabolic networks, signalling pathways …

Sobol sensitivity analysis: a tool to guide the development and evaluation of systems pharmacology models

XY Zhang, MN Trame, LJ Lesko… - CPT: pharmacometrics & …, 2015 - Wiley Online Library
A systems pharmacology model typically integrates pharmacokinetic, biochemical network,
and systems biology concepts into a unifying approach. It typically consists of a large …

Higher-order assemblies in a new paradigm of signal transduction

H Wu - Cell, 2013 - cell.com
Recent studies have revealed that multiple intracellular signaling proteins may assemble
into structured, yet sometimes infinite, higher-order signaling machines for transmission of …

Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves

A Goldbeter - … Transactions of the Royal Society A …, 2018 - royalsocietypublishing.org
The goal of this review article is to assess how relevant is the concept of dissipative structure
for understanding the dynamical bases of non-equilibrium self-organization in biological …

Regulation of CD95/Fas signaling at the DISC

IN Lavrik, PH Krammer - Cell Death & Differentiation, 2012 - nature.com
Abstract CD95 (APO-1/Fas) is a member of the death receptor (DR) family. Stimulation of
CD95 leads to induction of apoptotic and non-apoptotic signaling pathways. The formation …

Life and death in peripheral T cells

PH Krammer, R Arnold, IN Lavrik - Nature Reviews Immunology, 2007 - nature.com
During the course of an immune response, antigen-reactive T cells clonally expand and then
are removed by apoptosis to maintain immune homeostasis. Life and death of T cells is …

Physicochemical modelling of cell signalling pathways

BB Aldridge, JM Burke, DA Lauffenburger… - Nature cell …, 2006 - nature.com
Physicochemical modelling of signal transduction links fundamental chemical and physical
principles, prior knowledge about regulatory pathways, and experimental data of various …

Programming biological models in Python using PySB

CF Lopez, JL Muhlich, JA Bachman… - Molecular systems …, 2013 - embopress.org
Mathematical equations are fundamental to modeling biological networks, but as networks
get large and revisions frequent, it becomes difficult to manage equations directly or to …

A threshold mechanism mediates p53 cell fate decision between growth arrest and apoptosis

M Kracikova, G Akiri, A George… - Cell Death & …, 2013 - nature.com
The p53 tumor suppressor responds to certain cellular stresses by inducing transcriptional
programs that can lead to growth arrest or apoptosis. However, the molecular mechanisms …