Establishment of H3K9-methylated heterochromatin and its functions in tissue differentiation and maintenance

J Padeken, SP Methot, SM Gasser - Nature Reviews Molecular Cell …, 2022 - nature.com
Heterochromatin is characterized by dimethylated or trimethylated histone H3 Lys9
(H3K9me2 or H3K9me3, respectively) and is found at transposable elements, satellite …

[HTML][HTML] The human transcription factors

SA Lambert, A Jolma, LF Campitelli, PK Das, Y Yin… - Cell, 2018 - cell.com
Transcription factors (TFs) recognize specific DNA sequences to control chromatin and
transcription, forming a complex system that guides expression of the genome. Despite keen …

Progressive Cactus is a multiple-genome aligner for the thousand-genome era

J Armstrong, G Hickey, M Diekhans, IT Fiddes… - Nature, 2020 - nature.com
New genome assemblies have been arriving at a rapidly increasing pace, thanks to
decreases in sequencing costs and improvements in third-generation sequencing …

Taming transposable elements in vertebrates: from epigenetic silencing to domestication

MV Almeida, G Vernaz, ALK Putman, EA Miska - Trends in Genetics, 2022 - cell.com
Transposable element (TE)-derived sequences are ubiquitous in most eukaryotic genomes
known to date. Because their expression and mobility can lead to genomic instability …

KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks

M Imbeault, PY Helleboid, D Trono - Nature, 2017 - nature.com
The human genome encodes some 350 Krüppel-associated box (KRAB) domain-containing
zinc-finger proteins (KZFPs), the products of a rapidly evolving gene family that has been …

Multiplexed genome engineering by Cas12a and CRISPR arrays encoded on single transcripts

CC Campa, NR Weisbach, AJ Santinha, D Incarnato… - Nature …, 2019 - nature.com
The ability to modify multiple genetic elements simultaneously would help to elucidate and
control the gene interactions and networks underlying complex cellular functions. However …

KRAB zinc finger proteins

G Ecco, M Imbeault, D Trono - Development, 2017 - journals.biologists.com
Krüppel-associated box domain zinc finger proteins (KRAB-ZFPs) are the largest family of
transcriptional regulators in higher vertebrates. Characterized by an N-terminal KRAB …

Hominoid-specific transposable elements and KZFPs facilitate human embryonic genome activation and control transcription in naive human ESCs

J Pontis, E Planet, S Offner, P Turelli, J Duc, A Coudray… - Cell stem cell, 2019 - cell.com
Expansion of transposable elements (TEs) coincides with evolutionary shifts in gene
expression. TEs frequently harbor binding sites for transcriptional regulators, thus enabling …

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons

FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler… - Nature, 2014 - nature.com
Throughout evolution primate genomes have been modified by waves of retrotransposon
insertions,,. For each wave, the host eventually finds a way to repress retrotransposon …

SubCellBarCode: proteome-wide mapping of protein localization and relocalization

LM Orre, M Vesterlund, Y Pan, T Arslan, Y Zhu… - Molecular cell, 2019 - cell.com
Subcellular localization is a main determinant of protein function; however, a global view of
cellular proteome organization remains relatively unexplored. We have developed a robust …