Coevolution between transposable elements and recombination

TV Kent, J Uzunović, SI Wright - … Transactions of the …, 2017 - royalsocietypublishing.org
One of the most striking patterns of genome structure is the tight, typically negative,
association between transposable elements (TEs) and meiotic recombination rates. While …

Exploiting induced and natural epigenetic variation for crop improvement

NM Springer, RJ Schmitz - Nature reviews genetics, 2017 - nature.com
Plant breeding has traditionally relied on combining the genetic diversity present within a
species to develop combinations of alleles that provide desired traits. Epigenetic diversity …

Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

MJ Dubin, P Zhang, D Meng, MS Remigereau… - elife, 2015 - elifesciences.org
Epigenome modulation potentially provides a mechanism for organisms to adapt, within and
between generations. However, neither the extent to which this occurs, nor the mechanisms …

Plant tissue culture environment as a switch-key of (epi) genetic changes

PT Bednarek, R Orłowska - Plant Cell, Tissue and Organ Culture (PCTOC), 2020 - Springer
The in vitro tissue cultures are, beyond all difficulties, an essential tool in basic research as
well as in commercial applications. Numerous works devoted to plant tissue cultures proved …

Double-edged sword: the evolutionary consequences of the epigenetic silencing of transposable elements

JY Choi, YCG Lee - PLoS genetics, 2020 - journals.plos.org
Transposable elements (TEs) are genomic parasites that selfishly replicate at the expense of
host fitness. Fifty years of evolutionary studies of TEs have concentrated on the deleterious …

Transposable element influences on gene expression in plants

CD Hirsch, NM Springer - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Transposable elements (TEs) comprise a major portion of many plant genomes and bursts
of TE movements cause novel genomic variation within species. In order to maintain proper …

Wheat chromatin architecture is organized in genome territories and transcription factories

L Concia, A Veluchamy, JS Ramirez-Prado… - Genome Biology, 2020 - Springer
Background Polyploidy is ubiquitous in eukaryotic plant and fungal lineages, and it leads to
the co-existence of several copies of similar or related genomes in one nucleus. In plants …

RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

Q Li, JI Gent, G Zynda, J Song… - Proceedings of the …, 2015 - National Acad Sciences
The maize genome is relatively large (∼ 2.3 Gb) and has a complex organization of
interspersed genes and transposable elements, which necessitates frequent boundaries …

Genetic perturbation of the maize methylome

Q Li, SR Eichten, PJ Hermanson… - The Plant …, 2014 - academic.oup.com
DNA methylation can play important roles in the regulation of transposable elements and
genes. A collection of mutant alleles for 11 maize (Zea mays) genes predicted to play roles …